From daa3a9cade431b21bbc48b690c16dcb8746f3dce Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 21 Dec 2022 03:39:52 +0300
Subject: gn3: (gn3.random -> gn3.chancy): Rename module to avoid conflicts.

Rename the `gn3.random` module to gn3.chancy to avoid conflicts with Python's
`random` module.

* gn3/random.py -> gn3/chancy.py: rename module
* gn3/commands.py: update import
* gn3/computations/partial_correlations.py: update import
* gn3/computations/qtlreaper.py: update import
* gn3/computations/rust_correlation.py: update import
* gn3/db/correlations.py: update import
* gn3/db/traits.py: update import
* gn3/heatmaps.py: update import
* tests/integration/conftest.py: update import
---
 gn3/chancy.py                            | 11 +++++++++++
 gn3/commands.py                          |  2 +-
 gn3/computations/partial_correlations.py |  2 +-
 gn3/computations/qtlreaper.py            |  2 +-
 gn3/computations/rust_correlation.py     |  2 +-
 gn3/db/correlations.py                   |  2 +-
 gn3/db/traits.py                         |  2 +-
 gn3/heatmaps.py                          |  2 +-
 gn3/random.py                            | 11 -----------
 9 files changed, 18 insertions(+), 18 deletions(-)
 create mode 100644 gn3/chancy.py
 delete mode 100644 gn3/random.py

(limited to 'gn3')

diff --git a/gn3/chancy.py b/gn3/chancy.py
new file mode 100644
index 0000000..f0ba574
--- /dev/null
+++ b/gn3/chancy.py
@@ -0,0 +1,11 @@
+"""
+Functions to generate complex random data.
+"""
+import random
+import string
+
+def random_string(length):
+    """Generate a random string of length `length`."""
+    return "".join(
+        random.choices(
+            string.ascii_letters + string.digits, k=length))
diff --git a/gn3/commands.py b/gn3/commands.py
index d45d9e8..0e78fd2 100644
--- a/gn3/commands.py
+++ b/gn3/commands.py
@@ -16,7 +16,7 @@ from typing import Sequence
 from uuid import uuid4
 from redis.client import Redis  # Used only in type hinting
 
-from gn3.random import random_string
+from gn3.chancy import random_string
 from gn3.exceptions import RedisConnectionError
 
 
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py
index 597c5a3..9f02ad2 100644
--- a/gn3/computations/partial_correlations.py
+++ b/gn3/computations/partial_correlations.py
@@ -17,7 +17,7 @@ import pingouin
 from scipy.stats import pearsonr, spearmanr
 
 from gn3.settings import TEXTDIR
-from gn3.random import random_string
+from gn3.chancy import random_string
 from gn3.function_helpers import  compose
 from gn3.data_helpers import parse_csv_line
 from gn3.db.datasets import retrieve_trait_dataset
diff --git a/gn3/computations/qtlreaper.py b/gn3/computations/qtlreaper.py
index b61bdae..981a9c8 100644
--- a/gn3/computations/qtlreaper.py
+++ b/gn3/computations/qtlreaper.py
@@ -6,7 +6,7 @@ import os
 import subprocess
 from typing import Union
 
-from gn3.random import random_string
+from gn3.chancy import random_string
 from gn3.settings import TMPDIR, REAPER_COMMAND
 
 def generate_traits_file(samples, trait_values, traits_filename):
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py
index bd6fe97..546da0e 100644
--- a/gn3/computations/rust_correlation.py
+++ b/gn3/computations/rust_correlation.py
@@ -10,7 +10,7 @@ import csv
 import os
 
 from gn3.computations.qtlreaper import create_output_directory
-from gn3.random import random_string
+from gn3.chancy import random_string
 from gn3.settings import CORRELATION_COMMAND
 from gn3.settings import TMPDIR
 
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py
index a8a72bc..aec8eac 100644
--- a/gn3/db/correlations.py
+++ b/gn3/db/correlations.py
@@ -6,7 +6,7 @@ import os
 from functools import reduce
 from typing import Any, Dict, Tuple, Union, Optional
 
-from gn3.random import random_string
+from gn3.chancy import random_string
 from gn3.data_helpers import partition_all
 from gn3.db.species import translate_to_mouse_gene_id
 
diff --git a/gn3/db/traits.py b/gn3/db/traits.py
index f722e24..fa13fcc 100644
--- a/gn3/db/traits.py
+++ b/gn3/db/traits.py
@@ -4,7 +4,7 @@ from functools import reduce
 from typing import Any, Dict, Sequence
 
 from gn3.settings import TMPDIR
-from gn3.random import random_string
+from gn3.chancy import random_string
 from gn3.function_helpers import compose
 from gn3.db.datasets import retrieve_trait_dataset
 
diff --git a/gn3/heatmaps.py b/gn3/heatmaps.py
index 91437bb..882a3c7 100644
--- a/gn3/heatmaps.py
+++ b/gn3/heatmaps.py
@@ -12,7 +12,7 @@ import plotly.figure_factory as ff # type: ignore
 from plotly.subplots import make_subplots # type: ignore
 
 from gn3.settings import TMPDIR
-from gn3.random import random_string
+from gn3.chancy import random_string
 from gn3.computations.slink import slink
 from gn3.db.traits import export_trait_data
 from gn3.computations.correlations2 import compute_correlation
diff --git a/gn3/random.py b/gn3/random.py
deleted file mode 100644
index f0ba574..0000000
--- a/gn3/random.py
+++ /dev/null
@@ -1,11 +0,0 @@
-"""
-Functions to generate complex random data.
-"""
-import random
-import string
-
-def random_string(length):
-    """Generate a random string of length `length`."""
-    return "".join(
-        random.choices(
-            string.ascii_letters + string.digits, k=length))
-- 
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