From 374cabcb672a0d91eece4b21a83ff3db6afb30bb Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Wed, 10 Aug 2022 08:26:10 +0300
Subject: pylint fixes

---
 gn3/computations/rust_correlation.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gn3')

diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py
index 54d9243..e7f6bba 100644
--- a/gn3/computations/rust_correlation.py
+++ b/gn3/computations/rust_correlation.py
@@ -49,6 +49,8 @@ def run_correlation(
         dataset, trait_vals: str, method: str, delimiter: str,
         corr_type: str = "sample", top_n: int = 500):
     """entry function to call rust correlation"""
+
+    #pylint: disable=too-many-arguments
     (tmp_dir, tmp_file) = generate_input_files(dataset)
     (output_file, json_file) = generate_json_file(
         tmp_dir=tmp_dir, tmp_file=tmp_file, method=method, delimiter=delimiter,
@@ -62,6 +64,7 @@ def run_correlation(
 def parse_correlation_output(result_file: str,
                              corr_type: str, top_n: int = 500) -> dict:
     """parse file output """
+    #current types are sample and tissue
     def __parse_line__(line):
         (trait_name, corr_coeff, p_val, num_overlap) = line.rstrip().split(",")
         if corr_type == "sample":
@@ -72,8 +75,7 @@ def parse_correlation_output(result_file: str,
                 "corr_coefficient": corr_coeff,
                 "p_value": p_val
                 })
-
-        elif corr_type == "tissue":
+        if corr_type == "tissue":
             return (
                 trait_name,
                 {
-- 
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