From 00be7692a53f0199247a994a6494481f57142a9a Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 3 Sep 2021 15:38:43 +0000
Subject: Add covarstruct as a possible keyword for the rqtl_wrapper.R script
 (not integrated into the script yet though)

---
 gn3/api/rqtl.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index ebb746c..b5627c5 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -24,7 +24,7 @@ run the rqtl_wrapper script and return the results as JSON
         raise FileNotFoundError
 
     # Split kwargs by those with values and boolean ones that just convert to True/False
-    kwargs = ["model", "method", "nperm", "scale", "control_marker"]
+    kwargs = ["covarstruct", "model", "method", "nperm", "scale", "control_marker"]
     boolean_kwargs = ["addcovar", "interval", "pstrata"]
     all_kwargs = kwargs + boolean_kwargs
 
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