From 0a29e362bd8627b9346e2260a14c81a46e2a76d3 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 19 Nov 2021 16:42:00 +0530
Subject: Implement dataset metadata API endpoint.

* guix.scm: Import (gnu packages rdf).
(genenetwork3)[propagated-inputs]: Add python-sparqlwrapper.
* gn3/settings.py (SPARQL_ENDPOINT): New variable.
* gn3/api/general.py: Import datasets from gn3.db.
(dataset_metadata): New API endpoint.
* gn3/db/datasets.py: Import re, Template from string, Dict and Optional from
typing, JSON and SPARQLWrapper from SPARQLWrapper, SPARQL_ENDPOINT from
gn3.settings.
(sparql_query, dataset_metadata): New functions.
---
 gn3/settings.py | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'gn3/settings.py')

diff --git a/gn3/settings.py b/gn3/settings.py
index 0ac6698..c945fbf 100644
--- a/gn3/settings.py
+++ b/gn3/settings.py
@@ -13,6 +13,9 @@ REDIS_JOB_QUEUE = "GN3::job-queue"
 TMPDIR = os.environ.get("TMPDIR", tempfile.gettempdir())
 RQTL_WRAPPER = "rqtl_wrapper.R"
 
+# SPARQL endpoint
+SPARQL_ENDPOINT = "http://localhost:8891/sparql"
+
 # SQL confs
 SQL_URI = os.environ.get(
     "SQL_URI", "mysql://webqtlout:webqtlout@localhost/db_webqtl")
-- 
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