From c82819fabb0564726677f0b74d8a55c853b2b309 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Tue, 17 Oct 2023 12:49:00 +0300
Subject: Implement "GET /metadata/publications/:name".

* gn3/api/metadata.py: Delete gn3.db.rdf.get_publication_metadata.
(publication): Rename this ...
(publications): ... to this.  Return a json-ld result.
* gn3/db/rdf.py (get_publication_metadata): Delete.

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 gn3/db/rdf.py | 40 ----------------------------------------
 1 file changed, 40 deletions(-)

(limited to 'gn3/db')

diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py
index 1d714c1..2f80aa2 100644
--- a/gn3/db/rdf.py
+++ b/gn3/db/rdf.py
@@ -130,46 +130,6 @@ CONSTRUCT {
     return response
 
 
-def get_publication_metadata(
-        sparql_conn: SPARQLWrapper, name: str
-):
-    """Return info about a publication with a given NAME"""
-    __metadata_query = """
-$prefix
-
-CONSTRUCT {
-    gn:publication ?publicationTerm ?publicationValue .
-    gn:publication ?predicate ?subject .
-} WHERE {
-    $name ?publicationTerm ?publicationValue .
-    ?publication ?publicationTerm ?publicationValue .
-    OPTIONAL {
-       ?subject ?predicate ?publication .
-    } .
-    VALUES ?publicationTerm {
-        gn:pubMedId gn:title gn:volume
-        gn:abstract gn:pages gn:month gn:year gn:author
-    }
-    VALUES ?predicate {
-        gn:phenotypeOfPublication
-    }
-}
-"""
-    response: MonadicDict = MonadicDict()
-    for key, value in sparql_query(
-            sparql_conn,
-            Template(__metadata_query)
-            .substitute(
-                prefix=RDF_PREFIXES,
-                name=name
-            )
-    )[0].items():
-        response[key] = value
-        if isinstance(value, str) and not key.endswith("pubMedId"):
-            response[key] = value.map(get_url_local_name)  # type: ignore
-    return response
-
-
 def get_phenotype_metadata(
         sparql_conn: SPARQLWrapper, name: str
 ):
-- 
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