From 28b0ced4ec13451c5c7323ed5135d126f296836a Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Fri, 29 Oct 2021 04:55:30 +0300 Subject: Move the function to computations module Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * The function `batch_computed_tissue_correlation` is a pure computations function with no expressions accessing the database, as far as I can tell, therefore, this commit moves the function over to the gn3.computations.partial_correlations module that holds the pure computation functions. --- gn3/db/correlations.py | 8 -------- 1 file changed, 8 deletions(-) (limited to 'gn3/db/correlations.py') diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index 54d3079..f43b8a5 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -281,14 +281,6 @@ def fetch_gene_symbol_tissue_value_dict_for_trait( return fetch_gene_symbol_tissue_value_dict(xref_info[0], xref_info[2], conn) return {} -def batch_computed_tissue_correlation( - trait_value: str, symbol_value_dict: dict, - method: str = "pearson") -> Tuple[dict, dict]: - """ - `web.webqtl.correlation.correlationFunction.batchCalTissueCorr`""" - raise Exception("Not implemented!") - return ({}, {}) - def correlations_of_all_tissue_traits( trait_symbol: str, probeset_freeze_id: int, method: str, conn: Any) -> Tuple[dict, dict]: -- cgit v1.2.3