From eff7e0b649c88d6886c3cfce820327872afb7c3b Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 8 Dec 2021 07:22:13 +0300
Subject: Provide group from primary trait

Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi

* From the collections page, the group is not present, so this commit
  retrieves the group value from the primary trait.
---
 gn3/computations/partial_correlations.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'gn3/computations')

diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py
index 231b0a7..ced44a4 100644
--- a/gn3/computations/partial_correlations.py
+++ b/gn3/computations/partial_correlations.py
@@ -517,7 +517,7 @@ def tissue_correlation_by_list(
 def partial_correlations_entry(# pylint: disable=[R0913, R0914, R0911]
         conn: Any, primary_trait_name: str,
         control_trait_names: Tuple[str, ...], method: str,
-        criteria: int, group: str, target_db_name: str) -> dict:
+        criteria: int, target_db_name: str) -> dict:
     """
     This is the 'ochestration' function for the partial-correlation feature.
 
@@ -533,6 +533,7 @@ def partial_correlations_entry(# pylint: disable=[R0913, R0914, R0911]
     corr_min_informative = 4
 
     primary_trait = retrieve_trait_info(threshold, primary_trait_name, conn)
+    group = primary_trait["group"]
     primary_trait_data = retrieve_trait_data(primary_trait, conn)
     primary_samples, primary_values, _primary_variances = export_informative(
         primary_trait_data)
-- 
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