From 64598509e7e4c3d06a2446c564f383d0d275c090 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Thu, 14 Oct 2021 10:50:18 +0300
Subject: init file to call ctl script

---
 gn3/computations/ctl.py | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)
 create mode 100644 gn3/computations/ctl.py

(limited to 'gn3/computations')

diff --git a/gn3/computations/ctl.py b/gn3/computations/ctl.py
new file mode 100644
index 0000000..c4955a0
--- /dev/null
+++ b/gn3/computations/ctl.py
@@ -0,0 +1,20 @@
+"""module contains code to process ctl analysis data"""
+from gn3.commands import run_cmd
+
+from gn3.computations.wgcna import dump_wgcna_data
+from gn3.computations.wgcna import compose_wgcna_cmd
+
+
+def call_ctl_script(data):
+    """function to call ctl script"""
+
+    temp_file_name = dump_wgcna_data(data)
+    cmd = compose_wgcna_cmd("ctl_analysis.R", temp_file_name)
+
+    try:
+        cmd_results = run_cmd(cmd)
+        print(cmd_results)
+    except Exception as e:
+        raise e
+
+    return "hello"
-- 
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