From bb622cc5947e6ea896d3b94a1d2c4e0cbd1b26f9 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Tue, 22 Mar 2022 16:20:00 +0300
Subject: rename compose_wgcna to general func name

---
 gn3/computations/wgcna.py | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gn3/computations/wgcna.py')

diff --git a/gn3/computations/wgcna.py b/gn3/computations/wgcna.py
index c985491..01aaedb 100644
--- a/gn3/computations/wgcna.py
+++ b/gn3/computations/wgcna.py
@@ -55,17 +55,17 @@ def process_image(image_loc: str) -> bytes:
         return b""
 
 
-def compose_wgcna_cmd(rscript_path: str, temp_file_path: str):
+def compose_rscript_cmd(rscript_path: str, temp_file_path: str):
     """function to componse wgcna cmd"""
     # (todo):issue relative paths to abs paths
-    cmd = f"Rscript ./scripts/{rscript_path}  {temp_file_path}"
+    cmd = f'"Rscript ./scripts/{rscript_path}  {temp_file_path}"'
     return cmd
 
 
 def call_wgcna_script(rscript_path: str, request_data: dict):
     """function to call wgcna script"""
     generated_file = dump_wgcna_data(request_data)
-    cmd = compose_wgcna_cmd(rscript_path, generated_file)
+    cmd = compose_rscript_cmd(rscript_path, generated_file)
 
     # stream_cmd_output(request_data, cmd)  disable streaming of data
 
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