From 6c2c31f83786472b3f9cccd5c3cb2f70ceec4a63 Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Fri, 7 Feb 2025 14:24:01 +0300
Subject: refactor: Add rqtl2 default method  and update unittests.

---
 gn3/computations/rqtl2.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3/computations/rqtl2.py')

diff --git a/gn3/computations/rqtl2.py b/gn3/computations/rqtl2.py
index 206af1c..ae1e475 100644
--- a/gn3/computations/rqtl2.py
+++ b/gn3/computations/rqtl2.py
@@ -67,7 +67,7 @@ def compose_rqtl2_cmd(rqtl_path, input_file,
         "directory": workspace_dir,
         "output_file": output_file,
         "nperm": data.get("nperm", 0),
-        "method": data.get("method"),
+        "method": data.get("method", "HK"),
         "threshold": data.get("threshold", 1),
         "cores": config.get('MULTIPROCESSOR_PROCS', 1)
     }
-- 
cgit 1.4.1