From 7f66bb029322a06b52359abf8836e158afaa6755 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 20 Jun 2022 11:17:11 +0300
Subject: Restrict partial correlation method choices

- Have "Pearson's r" and "Spearman's rho" as the only valid choices for the
  partial correlations
---
 gn3/commands.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3/commands.py')

diff --git a/gn3/commands.py b/gn3/commands.py
index 41418b0..0a74b7d 100644
--- a/gn3/commands.py
+++ b/gn3/commands.py
@@ -69,7 +69,7 @@ def compose_pcorrs_command(
     """Compose the command to run partias correlations"""
     prefix_cmd = (
         f"{sys.executable}", "-m", "scripts.partial_correlations",
-        primary_trait, ",".join(control_traits), f'"{method}"')
+        primary_trait, ",".join(control_traits), method)
     if (
             kwargs.get("target_database") is not None
             and kwargs.get("target_traits") is None):
-- 
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