From 9a0c6fd1759e13fa7a934852f87e9aa4c62d7dfd Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 19 Apr 2023 14:42:31 +0300
Subject: auth: Setup selected traits correctly

Fix bugs with setting up of the selected traits for use while filtering the
search results.
---
 gn3/auth/authorisation/data/phenotypes.py | 2 ++
 gn3/auth/authorisation/data/views.py      | 2 +-
 2 files changed, 3 insertions(+), 1 deletion(-)

(limited to 'gn3/auth/authorisation')

diff --git a/gn3/auth/authorisation/data/phenotypes.py b/gn3/auth/authorisation/data/phenotypes.py
index 3ba478a..db16699 100644
--- a/gn3/auth/authorisation/data/phenotypes.py
+++ b/gn3/auth/authorisation/data/phenotypes.py
@@ -17,6 +17,8 @@ def linked_phenotype_data(
         authcursor.execute("SELECT * FROM linked_phenotype_data")
         linked = tuple(tuple(row[key] for key in authkeys)
                        for row in authcursor.fetchall())
+        if len(linked) <= 0:
+            return (item for item in tuple())
         paramstr = "".join(["(%s, %s, %s, %s)"] * len(linked))
         query = (
             "SELECT spc.SpeciesId, spc.SpeciesName, iset.InbredSetId, "
diff --git a/gn3/auth/authorisation/data/views.py b/gn3/auth/authorisation/data/views.py
index a14e78b..a9861d2 100644
--- a/gn3/auth/authorisation/data/views.py
+++ b/gn3/auth/authorisation/data/views.py
@@ -163,7 +163,7 @@ def __search_phenotypes__():
             f"--gn3-db-uri={app.config['SQL_URI']}",
             f"--redis-uri={redisuri}",
             f"--per-page={__request_key__('per_page')}"] +(
-                [f"--selected='{json.dumps(selected)}"]
+                [f"--selected={json.dumps(selected)}"]
                 if len(selected) > 0 else [])
         jobs.create_job(redisconn, {
             "job_id": job_id, "command": command, "status": "queued",
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