From ecb8929c4a749ff24e8d3086331ce149dc66b574 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Tue, 24 Jan 2023 13:44:00 +0000
Subject: search: Rename the mb prefix to position.
* gn3/api/search.py (parse_query): Rename the mb prefix to position.
---
gn3/api/search.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
(limited to 'gn3/api')
diff --git a/gn3/api/search.py b/gn3/api/search.py
index d25f362..e47e2f1 100644
--- a/gn3/api/search.py
+++ b/gn3/api/search.py
@@ -194,7 +194,7 @@ def parse_query(synteny_files_directory: Path, query: str):
queryparser.add_boolean_prefix("chr", chromosome_prefix)
queryparser.add_boolean_prefix("peakchr", "XPC")
queryparser.add_prefix("description", "XD")
- range_prefixes = ["mean", "peak", "mb", "peakmb", "additive", "year"]
+ range_prefixes = ["mean", "peak", "position", "peakmb", "additive", "year"]
for i, prefix in enumerate(range_prefixes):
queryparser.add_rangeprocessor(xapian.NumberRangeProcessor(i, prefix + ":"))
@@ -205,7 +205,7 @@ def parse_query(synteny_files_directory: Path, query: str):
field_processors = [partial(parse_location_field,
xapian.Query(species_prefix + species),
chromosome_prefix,
- range_prefixes.index("mb"),
+ range_prefixes.index("position"),
Just)]
# With synteny search, we search for the same gene sequences
# across different species. But, the same gene sequences may be
@@ -220,7 +220,7 @@ def parse_query(synteny_files_directory: Path, query: str):
partial(parse_location_field,
xapian.Query(species_prefix + lifted_species),
chromosome_prefix,
- range_prefixes.index("mb"),
+ range_prefixes.index("position"),
partial(liftover_interval,
synteny_files_directory / chain_file)))
queryparser.add_boolean_prefix(
--
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