From d5abcddba450c8b2592d42650c904ffae1ba6485 Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Fri, 15 Dec 2023 14:43:45 +0300 Subject: Update RDF ProbeSet query. * gn3/api/metadata.py (probesets): Update RDF query. Signed-off-by: Munyoki Kilyungi --- gn3/api/metadata.py | 17 ++++++++++++++--- 1 file changed, 14 insertions(+), 3 deletions(-) (limited to 'gn3/api') diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 55ac7f1..e85ac87 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -903,13 +903,24 @@ def probesets(name): $prefix CONSTRUCT { - ?probeset ?predicate ?object ; - gnt:hasChip ?chipName . + ?probeset ?predicate ?object . + ?symbol ?symbolPred ?symbolObj . + ?resource rdfs:label ?resourceLabel ; + rdfs:comments ?resourceComments . + ?chip rdfs:label ?chipName . } WHERE { ?probeset rdf:type gnc:Probeset ; rdfs:label "$name" ; ?predicate ?object . - FILTER (?predicate != gnt:hasChip) . + OPTIONAL { + ?symbol ^gnt:symbol ?probeset ; + rdf:type gnc:GeneSymbol ; + ?symbolPred ?symbolObj . + ?resource ^dct:references ?symbol ; + a ?resourceLink . + ?resourceLink rdfs:label ?resourceLabel ; + rdfs:comments ?resourceComments . + } . OPTIONAL{ ?probeset gnt:hasChip ?chip . ?chip rdfs:label ?chipName . -- cgit v1.2.3