From 64aedf4202efc4e50648d496d2a8eed3fc828b2f Mon Sep 17 00:00:00 2001
From: zsloan
Date: Sat, 28 Aug 2021 00:46:10 +0000
Subject: Fix issue that causes R/qtl to always run pair-scan even if pair-scan
 isn't selected

---
 gn3/api/rqtl.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3/api')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index 9aab9fa..b6c04eb 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -48,7 +48,7 @@ run the rqtl_wrapper script and return the results as JSON
                                        "output", rqtl_cmd.get('output_file'))):
         os.system(rqtl_cmd.get('rqtl_cmd'))
 
-    if "pairscan" in boolean_kwargs:
+    if "pairscan" in rqtl_bool_kwargs:
         rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile)
     else:
         rqtl_output['results'] = process_rqtl_mapping(rqtl_cmd.get('output_file'))
-- 
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