From d42b85ae5fcea1b71a7165fd6e64745a228c48f9 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 18 Jun 2021 21:13:03 +0000
Subject: Fixed pylint issues

---
 gn3/api/rqtl.py | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gn3/api/rqtl.py')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index 38f4c1e..ebb746c 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -6,7 +6,6 @@ from flask import current_app
 from flask import jsonify
 from flask import request
 
-from gn3.commands import run_cmd
 from gn3.computations.rqtl import generate_rqtl_cmd, process_rqtl_output, process_perm_output
 from gn3.computations.gemma import do_paths_exist
 
@@ -45,13 +44,15 @@ run the rqtl_wrapper script and return the results as JSON
     )
 
     rqtl_output = {}
-    if not os.path.isfile(os.path.join(current_app.config.get("TMPDIR"), "output", rqtl_cmd.get('output_file'))):
+    if not os.path.isfile(os.path.join(current_app.config.get("TMPDIR"),
+                                       "output", rqtl_cmd.get('output_file'))):
         os.system(rqtl_cmd.get('rqtl_cmd'))
 
     rqtl_output['results'] = process_rqtl_output(rqtl_cmd.get('output_file'))
 
     rqtl_output['results'] = process_rqtl_output(rqtl_cmd.get('output_file'))
     if int(rqtl_kwargs['nperm']) > 0:
-        rqtl_output['perm_results'], rqtl_output['suggestive'], rqtl_output['significant'] = process_perm_output(rqtl_cmd.get('output_file'))
+        rqtl_output['perm_results'], rqtl_output['suggestive'], rqtl_output['significant'] = \
+        process_perm_output(rqtl_cmd.get('output_file'))
 
     return jsonify(rqtl_output)
-- 
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