From 2852a935d67f1fe319ee925f412d40f7d8e88582 Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Wed, 19 Feb 2025 15:54:51 +0300
Subject: fix: Read and parse correct permutation file from R/qtl1

---
 gn3/api/rqtl.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'gn3/api/rqtl.py')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index e9ea1b9..eb49f8b 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -83,9 +83,10 @@ def compute(stream_output_file):
 
     if int(rqtl_kwargs["nperm"]) > 0:
         # pylint: disable=C0301
+        perm_output_file = f"PERM_{rqtl_cmd.get('output_file')}"
         (
             rqtl_output["perm_results"],
             rqtl_output["suggestive"],
             rqtl_output["significant"],
-        ) = process_perm_output(rqtl_cmd.get("output_file"))
+        ) = process_perm_output(perm_output_file)
     return jsonify(rqtl_output)
-- 
cgit 1.4.1