From 0a8754a582f057bd335441eab15da3f629df9ad7 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 17 May 2021 23:56:10 +0000
Subject: Fixed variety of issues detected by pylint

---
 gn3/api/rqtl.py | 13 ++++++-------
 1 file changed, 6 insertions(+), 7 deletions(-)

(limited to 'gn3/api/rqtl.py')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index 82cf34f..7756310 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -1,5 +1,4 @@
-import os
-
+"""Endpoints for running the rqtl cmd"""
 from flask import Blueprint
 from flask import current_app
 from flask import jsonify
@@ -12,8 +11,10 @@ rqtl = Blueprint("rqtl", __name__)
 
 @rqtl.route("/compute", methods=["POST"])
 def compute():
-    working_dir = os.path.join(current_app.config.get("TMPDIR"))
+    """Given at least a geno_file and pheno_file, generate and
+run the rqtl_wrapper script and return the results as JSON
 
+    """
     genofile = request.form['geno_file']
     phenofile = request.form['pheno_file']
 
@@ -28,10 +29,8 @@ def compute():
             rqtl_kwargs[kwarg] = request.form[kwarg]
 
     results = generate_rqtl_cmd(
-        rqtl_wrapper_cmd = current_app.config.get("RQTL_WRAPPER_CMD"),
-        output_dir = current_app.config.get('TMPDIR'),
-        rqtl_wrapper_kwargs = rqtl_kwargs
+        rqtl_wrapper_cmd=current_app.config.get("RQTL_WRAPPER_CMD"),
+        rqtl_wrapper_kwargs=rqtl_kwargs
     )
 
     return jsonify(results)
-
-- 
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