From 95eb105421d7fbe0b0ebf1de2f89a558eecbf0da Mon Sep 17 00:00:00 2001 From: Alexander Kabui Date: Wed, 11 Aug 2021 09:18:19 +0300 Subject: use normal function for correlation (#34) * use normal function for correlation + rename functions * update test for sample correlation * use normal function for tissue correlation + rename functions--- gn3/api/correlation.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gn3/api/correlation.py') diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py index e7e89cf..a3e366e 100644 --- a/gn3/api/correlation.py +++ b/gn3/api/correlation.py @@ -5,7 +5,7 @@ from flask import request from gn3.computations.correlations import compute_all_sample_correlation from gn3.computations.correlations import compute_all_lit_correlation -from gn3.computations.correlations import compute_all_tissue_correlation +from gn3.computations.correlations import compute_tissue_correlation from gn3.computations.correlations import map_shared_keys_to_values from gn3.db_utils import database_connector @@ -78,7 +78,7 @@ def compute_tissue_corr(corr_method="pearson"): primary_tissue_dict = tissue_input_data["primary_tissue"] target_tissues_dict = tissue_input_data["target_tissues_dict"] - results = compute_all_tissue_correlation(primary_tissue_dict=primary_tissue_dict, + results = compute_tissue_correlation(primary_tissue_dict=primary_tissue_dict, target_tissues_data=target_tissues_dict, corr_method=corr_method) -- cgit v1.2.3