From 05013c13710eccadb69746bf186eb672c2af69c4 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 22 Oct 2025 13:27:54 -0500
Subject: Fetch configs from app setting and pass them down

Fix the code to avoid using global variables holding configuration
variables to avoid the failures caused by action-at-a-distance effects
due to change of a value elsewhere.

This way, all code consistently receives the same configuration values
passed on from callers.

We pass on the following configuration settings:
* TMPDIR
* SQL_URI
* TEXTDIR
---
 gn3/api/correlation.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gn3/api/correlation.py')

diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py
index 6af96d7..3667a24 100644
--- a/gn3/api/correlation.py
+++ b/gn3/api/correlation.py
@@ -9,7 +9,6 @@ from flask import Blueprint
 from flask import request
 from flask import current_app
 
-from gn3.settings import SQL_URI
 from gn3.db_utils import database_connection
 from gn3.commands import run_sample_corr_cmd
 from gn3.responses.pcorrs_responses import build_response
@@ -144,7 +143,10 @@ def partial_correlation():
             cmd=command,
             job_queue=compute_job_queue(current_app),
             options={
-                "env": {"PYTHONPATH": ":".join(sys.path), "SQL_URI": SQL_URI},
+                "env": {
+                    "PYTHONPATH": ":".join(sys.path),
+                    "SQL_URI": current_app.config["SQL_URI"]
+                },
             },
             log_level=logging.getLevelName(
                 current_app.logger.getEffectiveLevel()).lower())
-- 
cgit 1.4.1