From 56ce88ad31dec3cece63e9370ca4e4c02139753b Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Tue, 16 Mar 2021 11:38:13 +0300
Subject: delete unwanted correlation stuff (#5)

* delete unwanted correlation stuff

* Refactor/clean up correlations (#4)

* initial commit for Refactor/clean-up-correlation

* add python scipy dependency

* initial commit for sample correlation

* initial commit for sample correlation endpoint

* initial commit for integration and unittest

* initial commit for registering  correlation blueprint

* add and modify unittest and integration tests for correlation

* Add compute compute_all_sample_corr   method for correlation

* add scipy to requirement txt file

* add tissue correlation for trait list

* add unittest for tissue correlation

* add lit correlation for trait list

* add unittests for lit correlation for trait list

* modify lit correlarion for trait list

* add unittests for lit correlation for trait list

* add correlation metho  in dynamic url

* add file format for expected structure input  while doing sample correlation

* modify input data structure -> add  trait id

* update tests for sample r correlation

* add compute all lit correlation method

* add endpoint for computing lit_corr

* add unit and integration tests for computing lit corr

* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation

* add unittest and integration tests for tissue correlation

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

* update guix scm file

* fix pylint error for correlations api

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>---
 docs/correlation.md | 42 ------------------------------------------
 1 file changed, 42 deletions(-)
 delete mode 100644 docs/correlation.md

(limited to 'docs')

diff --git a/docs/correlation.md b/docs/correlation.md
deleted file mode 100644
index bd1b278..0000000
--- a/docs/correlation.md
+++ /dev/null
@@ -1,42 +0,0 @@
-###  endpoint for correlation endpoint
-
-- The endpoint for correlation is 
-```python
-
- /api/correlation/compute/corr_compute
-```
-
-
-**To  be noted before  spinning the server for correlation computation\which can be set for example env 
-SQL_URI=mysql://user:password@localhost/db_webqtl and also to GENENETWORK_FILES default is HOME+"/data/genotype_files**
-
-(required  input data *should be in json format*)
-- "primary_samples": "",
-- "trait_id"
-- "dataset"
-- "sample_vals"
-- "corr_type"
-- "corr_dataset"
-- "corr_return_results"
-- "corr_samples_group"
-- "corr_sample_method"
-- "min_expr"
-- "location_type"
-- "loc_chr"
-- "min_loc_mb"
-- "max_loc_mb"
-- "p_range_lower"
-- "p_range_upper"
-
-- example
-
-```bash
-curl -X POST -H "Content-Type: application/json" \
-    -d '{"primary_samles":"",trait_id:"","dataset":"","sample_vals":"","corr_type":"",corr_sample_group:"",corr_sample_method:""}' \
-    localhost:5000/api/correlation/correlation_compute
-
- ```
-
-
-- output data is correlation_json 
-
-- 
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