From fa4fc7fdeb5d774936ea37c82c9ec017a88b0903 Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Tue, 5 Dec 2023 15:21:26 +0300 Subject: Update phenotype queries to use gnt:belongsToGroup. * gn3/api/metadata.py (phenotypes): Use gnt:belongsToGroup instead of xkos:classifiedUnder. Signed-off-by: Munyoki Kilyungi --- gn3/api/metadata.py | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 86112f6..2ae615b 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -444,13 +444,11 @@ CONSTRUCT { gnt:mb ?mb . } WHERE { ?phenotype skos:altLabel "$name" ; - xkos:classifiedUnder ?inbredSet ; + gnt:belongsToGroup ?inbredSet ; ?predicate ?object . - ?inbredSet ^xkos:classifiedUnder ?phenotype ; - rdfs:label ?inbredSetName ; + ?inbredSet rdfs:label ?inbredSetName ; xkos:generalizes ?species . ?species skos:prefLabel ?speciesName . - FILTER (!regex(str(?predicate), '(classifiedUnder)', 'i')) . OPTIONAL { ?publication ^dct:isReferencedBy ?phenotype ; rdf:type fabio:ResearchPaper ; @@ -466,7 +464,7 @@ CONSTRUCT { } . OPTIONAL { ?dataset rdf:type dcat:Dataset ; - xkos:classifiedUnder ?inbredSet ; + gnt:belongsToGroup ?inbredSet ; xkos:classifiedUnder gnc:Phenotype ; rdfs:label ?datasetLabel ; skos:prefLabel ?datasetName . -- cgit v1.2.3