From d98d79ab06ddae8f1dd581862261f3be9c130ba1 Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Fri, 24 Jan 2025 11:42:47 +0300
Subject: Refactor: return the relative file to the workspace directory.

---
 gn3/computations/rqtl2.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/gn3/computations/rqtl2.py b/gn3/computations/rqtl2.py
index a6f8bcb..adb6550 100644
--- a/gn3/computations/rqtl2.py
+++ b/gn3/computations/rqtl2.py
@@ -42,7 +42,8 @@ def write_to_csv(work_dir, file_name, data:list[dict],
         writer.writeheader()
         for row in  data:
             writer.writerow(row)
-        return file_path
+        # return the relative file to the workspace see rqtl2 docs
+        return file_name
 
 
 def validate_required_keys(required_keys:list, data:dict) -> tuple[bool, str]:
-- 
cgit 1.4.1