From 195bf83a3165b7994e56f95ee3199a66dc086b78 Mon Sep 17 00:00:00 2001 From: Alexander Date: Sat, 28 May 2022 17:51:18 +0300 Subject: new variable: CORRELATION_COMMAND --- gn3/settings.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/gn3/settings.py b/gn3/settings.py index 6eec2a1..78ae7cb 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -29,6 +29,10 @@ WGCNA_RSCRIPT = "wgcna_analysis.R" # qtlreaper command REAPER_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/qtlreaper" +# correlation command + +CORRELATION_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/correlation_rust" + # genotype files GENOTYPE_FILES = os.environ.get( "GENOTYPE_FILES", f"{os.environ.get('HOME')}/genotype_files/genotype") -- cgit v1.2.3