From 0872774cdcacddb1bc59051e274e50256a1126d0 Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Thu, 12 Dec 2024 14:05:45 +0300 Subject: Remove quote marks for qtl output. Signed-off-by: Munyoki Kilyungi --- gn3/computations/rqtl.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gn3/computations/rqtl.py b/gn3/computations/rqtl.py index 16f1398..21c863a 100644 --- a/gn3/computations/rqtl.py +++ b/gn3/computations/rqtl.py @@ -321,7 +321,7 @@ def process_perm_output(file_name: str) -> Tuple[List, float, float]: continue line_items = line.split(",") - perm_results.append(float(line_items[1])) + perm_results.append(float(line_items[1].replace("\"", ""))) suggestive = np.percentile(np.array(perm_results), 67) significant = np.percentile(np.array(perm_results), 95) -- cgit 1.4.1