From 0131996686e8cc34ab698212f2da879af0dea71c Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Tue, 17 Sep 2024 18:35:57 +0300 Subject: Update docs with extra conf vars for updating virtuoso. Signed-off-by: Munyoki Kilyungi --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index c75e059..f7fe2c8 100644 --- a/README.md +++ b/README.md @@ -124,6 +124,10 @@ These configurations should be set in an external config file, pointed to with t - SPARQL_ENDPOINT (ex: "http://localhost:9082/sparql") - XAPIAN_DB_PATH (ex: "/export/data/genenetwork/xapian") - TMPDIR +- SPARQL_USER +- SPARQL_ENDPOINT (ex: "http://localhost:9082/sparql-auth/") +- SPARQL_PASSWORD +- SPARQL_AUTH_URI TMPDIR also needs to be set correctly for the R script(s) because they pass results on as files on the local system (previously there was an issue with it being set to /tmp instead of ~/genenetwork3/tmp). Note that the Guix build system should take care of the paths. -- cgit v1.2.3