genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2021-02-16	Add procedure for uploading gzipped file	BonfaceKilz
	* gn3/file_utils.py (extract_uploaded_file): New procedure. * tests/unit/test_file_utils.py: Test cases for ^^. * tests/unit/upload-data.tar.gz: New test data.
2021-02-16	Add extra option to set email when queueing CMD	BonfaceKilz
	The e-mail field will be used to send the results of the computation when it is completed.
2021-02-16	Add basic integration tests to test out the API	BonfaceKilz

2021-02-16	Register blueprints in gn3/app.py	BonfaceKilz
	* main.py: Move blueprint registrations to ... * gn3/app.py (create_app): ... here
2021-02-16	gn3: commands: Add new procedure for running a command	BonfaceKilz
	* gn3/commands.py (run_command): New procedure.
2021-02-15	Add default redis config	BonfaceKilz

2021-02-15	Add test stubbed gemma endpoint	BonfaceKilz

2021-02-15	Bootsrap the flask application	BonfaceKilz

2021-02-12	Add configuration file for the project	BonfaceKilz

2021-02-12	Use sorted list of files when calculating md5sums of directory	BonfaceKilz
	* gn3/file_utils.py (get_dir_hash): Sort list of files before calculating their md5sums. * tests/unit/test_file_utils.py (test_get_dir_hash): Update test-case md5sum.
2021-02-12	Add custom gn3 exceptions	BonfaceKilz

2021-02-12	Add new procedure for queueing a command	BonfaceKilz
	* gn3/commands.py (queue_cmd): New procedure. * tests/unit/test_commands.py: New test-cases for ^^.
2021-02-12	Add new procedure for composing a gemma cmd	BonfaceKilz
	* gn3/commands.py: New file * tests/unit/test_commands.py: New test-cases for ^^.
2021-02-12	Add new procedure to return a python dict from a json file	BonfaceKilz
	* gn3/file_utils.py (jsonfile_to_dict): New procedure * tests/unit/test_file_utils.py: New test-cases.
2021-02-12	Add new procedure for looking up files in a given ENV variable	BonfaceKilz
	* gn3/file_utils.py (lookup_file): New function. * tests/unit/test_file_utils.py: New test cases for ^^.
2021-02-12	Add function for computing the hash of a directory	BonfaceKilz