aboutsummaryrefslogtreecommitdiff
path: root/gn3/computations
AgeCommit message (Expand)Author
2021-09-06Provide function to organise parsed QTLReaper resultsMuriithi Frederick Muriuki
2021-09-06Leave "Chr" value as string when parsingMuriithi Frederick Muriuki
2021-09-06Handle type-coercion exceptionsMuriithi Frederick Muriuki
2021-09-06Find nearest markerMuriithi Frederick Muriuki
2021-08-31Fix linting errors, minor bugs and reorganise codeMuriithi Frederick Muriuki
2021-08-31Update `heatmap_data` function: remove extraneous dataMuriithi Frederick Muriuki
2021-08-31Parse QTLReaper outputsMuriithi Frederick Muriuki
2021-08-31Fix bugs with `run_reaper` functionMuriithi Frederick Muriuki
2021-08-30Fix issues with traits file formatMuriithi Frederick Muriuki
2021-08-30Remove empty lineMuriithi Frederick Muriuki
2021-08-30Fix some linting errors and minor bugs.Muriithi Frederick Muriuki
2021-08-30Implement module for interfacing with rust-qtlreaperMuriithi Frederick Muriuki
2021-08-27Provide intermediate data in final resultsMuriithi Frederick Muriuki
2021-08-27Export trait data to fileMuriithi Frederick Muriuki
2021-08-27Rework strains and trait values retrievalMuriithi Frederick Muriuki
2021-08-20Merge branch 'main' of github.com:genenetwork/genenetwork3 into heatmap_gener...Muriithi Frederick Muriuki
2021-08-20Fix typing issue(s) caught by mypyMuriithi Frederick Muriuki
2021-08-20Retrieve the strains with valid valuesMuriithi Frederick Muriuki
2021-08-20Add tests for ordering and implement functionMuriithi Frederick Muriuki
2021-08-20Minor correlation fixes (#36)Alexander Kabui
2021-08-18Test the clusteringMuriithi Frederick Muriuki
2021-08-18Fix obvious linting errorsMuriithi Frederick Muriuki
2021-08-18Make child sequence a listMuriithi Frederick Muriuki
2021-08-18Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-17Test the clusteringMuriithi Frederick Muriuki
2021-08-17Fix obvious linting errorsMuriithi Frederick Muriuki
2021-08-17Make child sequence a listMuriithi Frederick Muriuki
2021-08-17Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-16Merge pull request #32 from genenetwork/heatmap_decompose_db_retrievalBonfaceKilz
2021-08-12Fix linting errorsMuriithi Frederick Muriuki
2021-08-12Import missing definitionsMuriithi Frederick Muriuki
2021-08-11use normal function for correlation (#34)Alexander Kabui
2021-08-09Build up the heatmap dataMuriithi Frederick Muriuki
2021-08-04Fix issues caught by pylintMuriithi Frederick Muriuki
2021-07-29Add partial type annotations for slink moduleMuriithi Frederick Muriuki
2021-07-29Add partial type annotations for slink moduleMuriithi Frederick Muriuki
2021-07-26Merge branch 'main' of github.com:genenetwork/genenetwork3Muriithi Frederick Muriuki
2021-07-26Fix issues caught by pylintMuriithi Frederick Muriuki
2021-07-26Check if corr_coefficient is NaN, since apparently it's stored as NaN instead...zsloan
2021-07-23Add data examples for `slink`. Implement function.Muriithi Frederick Muriuki
2021-07-23Iterate through all valid pairsMuriithi Frederick Muriuki
2021-07-23Extract function to flatten list of listsMuriithi Frederick Muriuki
2021-07-23Fix issue caught in `nearest` while testing `slink`Muriithi Frederick Muriuki
2021-07-23New function (`slink`): return [] on exceptionMuriithi Frederick Muriuki
2021-07-23Add dummy module documentationMuriithi Frederick Muriuki
2021-07-23Add docstring for `nearest' functionMuriithi Frederick Muriuki
2021-07-22Get shortest distance from two lists/tuples of member coordinatesMuriithi Frederick Muriuki
2021-07-22Extract common `is_list_or_tuple' functionMuriithi Frederick Muriuki
2021-07-22Test for shortest distance between members in a list and coordinateMuriithi Frederick Muriuki
2021-07-22Check that given list and both coordinates, we get shortest distanceMuriithi Frederick Muriuki
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 10:40:55 +0000