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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2024-01-10
Switch to gnt:belongsToSpecies in genotype queries.
Munyoki Kilyungi
2024-01-10
Remove hard-coded dataset name.
Munyoki Kilyungi
2024-01-08
merge for latest commits
Alexander_Kabui
2024-01-08
fix query formatting and increase no retries
Alexander_Kabui
2024-01-08
Optionally fetch dataset metadata if provided during probeset fetch.
Munyoki Kilyungi
2024-01-08
add json file for all references
Alexander_Kabui
2024-01-08
Update retry parameters for custom requests to Fahamu AI endpoint.
Munyoki Kilyungi
2024-01-08
disable process wait
Alexander_Kabui
2024-01-06
Remove extra gene metadata from query as it's un-necessary.
Munyoki Kilyungi
2024-01-06
Add extra keys to the Probeset's json-ld context.
Munyoki Kilyungi
2024-01-06
Refactor gene symbol handling and add references to probeset.
Munyoki Kilyungi
2024-01-06
Use gnt:geneSymbol property to fetch genes in Probeset RDF query.
Munyoki Kilyungi
2024-01-05
http request header fixes
Alexander_Kabui
2024-01-05
max delay time
Alexander_Kabui
2024-01-05
increase number of retries
Alexander_Kabui
2024-01-03
fix fetch token error from curent app
Alexander_Kabui
2024-01-03
pylint fixes
Alexander_Kabui
2024-01-03
fetch auth token from current app
Alexander_Kabui
2024-01-03
load gn3 secret file
Alexander_Kabui
2024-01-03
Delete obsolete Guix system definition.
Arun Isaac
2024-01-03
Do not log user information.
Arun Isaac
2023-12-29
handle exception for request error
Alexander_Kabui
2023-12-29
fix mypy issues
Alexander_Kabui
2023-12-22
Feature/gn llms (#140)
Alexander Kabui
2023-12-22
setup.py: Find packages automatically using find_packages.
Arun Isaac
2023-12-19
README: Replace pylint and mypy CI badges with all-tests CI badge.
Arun Isaac
2023-12-19
guix: Add genenetwork3-all-tests.
Arun Isaac
2023-12-15
Update RDF ProbeSet query.
Munyoki Kilyungi
2023-12-15
First frame and then compact probeset results.
Munyoki Kilyungi
2023-12-15
Update ProbeSet's context.
Munyoki Kilyungi
2023-12-15
Update BASE_CONTEXT entries.
Munyoki Kilyungi
2023-12-07
Fix typo in GoTree prefix.
Munyoki Kilyungi
2023-12-07
Add optional property for platform info in dataset representation.
Munyoki Kilyungi
2023-12-07
Fetch normalization metadata correctly.
Munyoki Kilyungi
2023-12-07
Fix typo in platform prefix.
Munyoki Kilyungi
2023-12-07
Refactor metadata mappings for improved dataset representation.
Munyoki Kilyungi
2023-12-07
Update phenotype queries to use gnt:belongsToGroup.
Munyoki Kilyungi
2023-12-05
Move script to gn-auth
Frederick Muriuki Muriithi
2023-11-30
Add a phenotype's chromosome location to the Phenotype fetch.
Munyoki Kilyungi
2023-11-30
Place publication details on a sub-graph of its own.
Munyoki Kilyungi
2023-11-30
Replace LRS with lodScore.
Munyoki Kilyungi
2023-11-27
Remove unused variable "args".
Munyoki Kilyungi
2023-11-27
Attach phenotype endpoints to one function.
Munyoki Kilyungi
2023-11-27
Use "dcat:Dataset" when framing when fetching phenotypes.
Munyoki Kilyungi
2023-11-27
Construct a more semantic graph for phenotypes.
Munyoki Kilyungi
2023-11-27
Remove unused argument during template substitution.
Munyoki Kilyungi
2023-11-27
Replace "ex:" prefix with a semantic prefix when fetching phenotype.
Munyoki Kilyungi
2023-11-27
Add "gnt:abbreviation" and "ex:inbredSet" to PHENOTYPE_CONTEXT.
Munyoki Kilyungi
2023-11-27
Add "ex:species" to phenotypes json-ld context.
Munyoki Kilyungi
2023-11-27
Return distinct results after a dataset search.
Munyoki Kilyungi
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