diff options
Diffstat (limited to 'gn3/db/traits.py')
| -rw-r--r-- | gn3/db/traits.py | 35 |
1 files changed, 33 insertions, 2 deletions
diff --git a/gn3/db/traits.py b/gn3/db/traits.py index e80f41b..772db52 100644 --- a/gn3/db/traits.py +++ b/gn3/db/traits.py @@ -140,6 +140,16 @@ def update_sample_data(conn: Any, #pylint: disable=[R0913] (None if value == "x" else value, strain_id, data_id)) updated_published_data = cursor.rowcount + if not updated_published_data: + cursor.execute( + "SELECT * FROM " + "PublishData WHERE StrainId = " + "%s AND Id = %s" % (strain_id, data_id)) + if not cursor.fetchone(): + cursor.execute(("INSERT INTO PublishData (Id, StrainId, " + " value) VALUES (%s, %s, %s)") % + (data_id, strain_id, value)) + updated_published_data = cursor.rowcount # Update the PublishSE table cursor.execute(("UPDATE PublishSE SET error = %s " @@ -147,13 +157,34 @@ def update_sample_data(conn: Any, #pylint: disable=[R0913] (None if error == "x" else error, strain_id, data_id)) updated_se_data = cursor.rowcount + if not updated_se_data: + cursor.execute( + "SELECT * FROM " + "PublishSE WHERE StrainId = " + "%s AND DataId = %s" % (strain_id, data_id)) + if not cursor.fetchone(): + cursor.execute(("INSERT INTO PublishSE (StrainId, DataId, " + " error) VALUES (%s, %s, %s)") % + (strain_id, data_id, + None if error == "x" else error)) + updated_se_data = cursor.rowcount # Update the NStrain table cursor.execute(("UPDATE NStrain SET count = %s " "WHERE StrainId = %s AND DataId = %s"), - (None if count == "x" else count, - strain_id, data_id)) + (count, strain_id, data_id)) updated_n_strains = cursor.rowcount + if not updated_n_strains: + cursor.execute( + "SELECT * FROM " + "NStrain WHERE StrainId = " + "%s AND DataId = %s" % (strain_id, data_id)) + if not cursor.fetchone(): + cursor.execute(("INSERT INTO NStrain " + "(StrainId, DataId, count) " + "VALUES (%s, %s, %s)") % + (strain_id, data_id, count)) + updated_n_strains = cursor.rowcount return (updated_published_data, updated_se_data, updated_n_strains) |