diff options
Diffstat (limited to 'gn3/computations/rqtl.py')
| -rw-r--r-- | gn3/computations/rqtl.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/gn3/computations/rqtl.py b/gn3/computations/rqtl.py index 45232e3..bb28dc3 100644 --- a/gn3/computations/rqtl.py +++ b/gn3/computations/rqtl.py @@ -105,8 +105,8 @@ def pairscan_for_figure(file_name: str) -> Dict: # Open the map file with the list of markers/pseudomarkers and their positions with open(os.path.join(current_app.config.get("TMPDIR", "/tmp"), "output", "MAP_" + file_name), "r") as the_file: - chr_list = [] - pos_list = [] + chr_list = [] # type: List + pos_list = [] # type: List for i, line in enumerate(the_file): if i == 0: # Skip first line continue @@ -187,7 +187,7 @@ def build_marker_pos_dict(genotype_file: str) -> Dict: mb_exists = "Mb" in header_items pos_column = header_items.index("Mb") if mb_exists else header_items.index("cM") - the_markers = {} + the_markers = {"1": {}} # type: Dict[str, Dict] for line in lines[1:]: # The lines with markers line_items = line.split("\t") this_chr = line_items[0] |