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authorFrederick Muriuki Muriithi2021-11-15 07:58:10 +0300
committerFrederick Muriuki Muriithi2021-11-15 07:58:10 +0300
commit29fc003070b45f61e7ab1048a818201b5beb9298 (patch)
tree9e8be7a4c7b41d0e61cadf9a1d140fac86f4b425 /tests/unit/test_data/metadata.json
parent7d3929486142481ba0fe36f302845accf8b497ee (diff)
downloadgenenetwork3-29fc003070b45f61e7ab1048a818201b5beb9298.tar.gz
Fix bugs in recursive partial correlations
* gn3/computations/partial_correlations.py: Remove rounding. Fix computation of remaining covariates * tests/unit/computations/partial_correlations_test_data/pcor_rec_blackbox_test.txt: reduce the number of covariates to between one (1) and three (3) * tests/unit/computations/test_partial_correlations.py: fix some minor bugs It turns out that the computation complexity increases exponentially, with the number of covariates. Therefore, to get a somewhat sensible test time, while retaining a large-ish number of tests, this commit reduces the number of covariates to between 1 and 3.
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