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| author | zsloan | 2021-08-11 17:36:18 +0000 |
|---|---|---|
| committer | zsloan | 2021-09-23 19:29:59 +0000 |
| commit | 1408b107beb4c799a1d7afaf571f53d0d56305bf (patch) | |
| tree | 630c53b55be13122e3544ec376eace52433cb2cd /gn3/computations | |
| parent | 9f913b460cc7f72f1732195e6360c2d45b597d99 (diff) | |
| download | genenetwork3-1408b107beb4c799a1d7afaf571f53d0d56305bf.tar.gz | |
Removed quotes from beginning and end of chromosome string
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/rqtl.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/computations/rqtl.py b/gn3/computations/rqtl.py index 45cf430..3b50c85 100644 --- a/gn3/computations/rqtl.py +++ b/gn3/computations/rqtl.py @@ -119,7 +119,7 @@ def pairscan_for_figure(file_name: str) -> Dict: if i == 0: # Skip first line continue line_items = [item.rstrip('\n') for item in line.split(",")] - chr_list.append(line_items[1]) + chr_list.append(line_items[1][1:-1]) pos_list.append(line_items[2]) figure_data['chr'] = chr_list figure_data['pos'] = pos_list |