diff options
| author | zsloan | 2021-08-28 00:46:10 +0000 |
|---|---|---|
| committer | zsloan | 2021-09-23 19:29:59 +0000 |
| commit | 23be50a195e648fa567777c4ab679d4c30cf6933 (patch) | |
| tree | 38d862216a083a10c79e018cc7834c98999a14a6 /gn3/api/rqtl.py | |
| parent | 9aeafe51e60989fb018d147163c4fb861ceeb256 (diff) | |
| download | genenetwork3-23be50a195e648fa567777c4ab679d4c30cf6933.tar.gz | |
Fix issue that causes R/qtl to always run pair-scan even if pair-scan isn't selected
Diffstat (limited to 'gn3/api/rqtl.py')
| -rw-r--r-- | gn3/api/rqtl.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index 2ff0f4e..6548e1a 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -48,7 +48,7 @@ run the rqtl_wrapper script and return the results as JSON "output", rqtl_cmd.get('output_file'))): os.system(rqtl_cmd.get('rqtl_cmd')) - if "pairscan" in boolean_kwargs: + if "pairscan" in rqtl_bool_kwargs: rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile) else: rqtl_output['results'] = process_rqtl_mapping(rqtl_cmd.get('output_file')) |