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authorMuriithi Frederick Muriuki2021-08-20 14:10:45 +0300
committerMuriithi Frederick Muriuki2021-08-20 14:10:45 +0300
commit8b2c776771d2a70613a1e31d6e6671b612cfbafc (patch)
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parentded960e3d32e4d7ebe590deda27fc47175be73d9 (diff)
downloadgenenetwork3-8b2c776771d2a70613a1e31d6e6671b612cfbafc.tar.gz
Retrieve the strains with valid values
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/computations/heatmap.py: add function to get strains with values * tests/unit/computations/test_heatmap.py: new tests Add function to get the strains whose values are not `None` from the `trait_data` object passed in. This migrates https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/heatmap/Heatmap.py#L215-221 into a separate function that can handle that and be tested independently of any other code.
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