aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorBonfaceKilz2021-04-27 11:58:54 +0300
committerBonfaceKilz2021-05-08 19:19:47 +0300
commit5217a366e7904142fc443594facb126d28cd2b25 (patch)
tree095513342ee3d17564e5a30c3fecd0c30d6b401f
parent46cee438cedc5d855676958d97bf67d127d5e3e3 (diff)
downloadgenenetwork3-5217a366e7904142fc443594facb126d28cd2b25.tar.gz
db: traits: Add extra method for looking up webqtl datasets
-rw-r--r--gn3/db/traits.py13
1 files changed, 13 insertions, 0 deletions
diff --git a/gn3/db/traits.py b/gn3/db/traits.py
index 3134d31..0cebe2c 100644
--- a/gn3/db/traits.py
+++ b/gn3/db/traits.py
@@ -34,6 +34,19 @@ class webqtlCaseData:
return _str
+def lookup_webqtldataset_name(riset_name: str, conn: Any):
+ """Given a group name(riset), return it's name e.g. BXDPublish,
+HLCPublish."""
+ with conn.cursor() as cursor:
+ cursor.execute(
+ "SELECT PublishFreeze.Name FROM "
+ "PublishFreeze, InbredSet WHERE "
+ "PublishFreeze.InbredSetId = InbredSet.Id "
+ "AND InbredSet.Name = '%s'" % riset_name)
+ _result, *_ = cursor.fetchone()
+ return _result
+
+
def get_riset(data_type: str, name: str, conn: Any):
query, _name, _id = None, None, None
if data_type == "Publish":