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{%extends "base.html"%}
{%from "oauth2/profile_nav.html" import profile_nav%}
{%from "oauth2/display_error.html" import display_error%}
{%block title%}View User{%endblock%}
{%block content%}
<div class="container" style="min-width: 1250px;">
{{profile_nav("data", user_privileges)}}
{{flash_me()}}
<div class="container-fluid">
<div class="row">
<form method="POST" action="{{url_for('oauth2.data.list_data')}}">
<legend>Dataset Type</legend>
<input type="hidden" name="offset" value="0" />
<input type="hidden" name="menus" value="{{menus | tojson}}" />
<div class="form-group">
<label for="select-menu">Dataset</label>
<select id="select-menu" name="dataset">
{%for species_id, species_data in menus.items()%}
<optgroup label="{{species_data.display_name}}">
{%for group_id, group_data in species_data["groups"].items()%}
<optgroup label=" {{group_data.group_name}}">
{%for type_id, type_data in group_data["types"].items()%}
<optgroup label="{{type_data.menu_heading}}">
{%for dataset in type_data["datasets"]%}
<option value="{{dataset.dataset_id}}">
{{dataset.dataset_fullname}}
</option>
{%endfor%}
</optgroup>
{%endfor%}
</optgroup>
{%endfor%}
</optgroup>
{%endfor%}
</select>
</div>
<div class="form-group">
<label for="dataset_type" class="form-label">Dataset Type</label>
<select name="dataset_type" required="required">
<option value="">Select dataset type</option>
<option value="mrna"
{%if dataset_type=="mrna"%}
selected="selected"
{%endif%}>mRNA Assay Datasets</option>
<option value="genotype"
{%if dataset_type=="genotype"%}
selected="selected"
{%endif%}>Genotype Datasets</option>
<option value="phenotype"
{%if dataset_type=="phenotype"%}
selected="selected"
{%endif%}>Phenotype/Publish Datasets</option>
</select>
</div>
<input type="submit" value="Fetch Unlinked Data" class="btn btn-primary" />
</form>
</div>
{%if dataset_type is defined%}
{%if data_items_error is defined%}
{{display_error("Data Error", data_items_error)}}
{%else%}
<div class="row">
<form method="POST" action="{{url_for('oauth2.data.link_data')}}">
<legend>Link Data to Group</legend>
<input type="hidden" name="offset" value="{{offset or 0}}" />
<input type="hidden" name="dataset_type" value="{{dataset_type}}" />
<div class="form-group">
<label for="select-group-id">Group</label>
<select name="group_id" required="required">
<option value="">Select group</option>
{%for group in groups%}
<option value="{{group.group_id}}">{{group.group_name}}</option>
{%endfor%}
</select>
</div>
<table class="table">
<caption>Link Data to Group</caption>
<thead>
<tr>
<th>Select</th>
{%if dataset_type == "phenotype"%}
<th>Trait ID</th>
<th>Data Group</th>
{%endif%}
<th>Dataset Name</th>
<th>Dataset Full Name</th>
<th>Link</th>
</tr>
</thead>
<tbody>
{%for data_item in data_items%}
<tr>
<td>
<input type="checkbox" value="{{data_item.Id}}"
name="dataset_ids" />
</td>
{%if dataset_type == "phenotype"%}
<td>
<a href="/show_trait?trait_id={{data_item.Id}}&dataset={{data_item.dataset_name}}"
title="Trait Page">
{{data_item.Id}}
</a>
</td>
<td>{{data_item.InbredSetName}}</td>
{%endif%}
<td>
<a href="https://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{data_item.accession_id}}&InfoPageName={{data_item.dataset_name}}"
title="Link to information on dataset '{{data_item.dataset_fullname}}'"
target="_blank">
{{data_item.dataset_name}}
</a>
</td>
<td>{{data_item.dataset_fullname}}</td>
<td>
<input type="submit" value="Link" class="btn btn-info" />
</td>
</tr>
{%else%}
<tr>
<td colspan="4">
<span class="glyphicon glyphicon-info-sign text-danger">
</span>
<strong class="text-info">No available data to link</strong>
</td>
</tr>
{%endfor%}
</tbody>
</table>
</form>
<form method="POST" action="{{url_for('oauth2.data.list_data')}}">
<input type="hidden" name="dataset_type" value="{{dataset_type}}" />
<input type="hidden" name="offset" value="{{offset or 0}}" />
<div class="form-group" style="margin: auto;width: 50%;">
{%if offset != 0%}
<input type="submit" name="offset_submit" value="Previous" class="btn btn-warning" />
{%endif%}
{%if data_items | length == 100:%}
<input type="submit" name="offset_submit" value="Next" class="btn btn-warning" />
{%endif%}
</div>
</form>
</div>
{%endif%}
{%endif%}
</div>
</div>
{%endblock%}
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