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# Genenetwork2 specific methods and callback handler
#
# Copyright (C) 2015 Pjotr Prins (pjotr.prins@thebird.nl)
#
from __future__ import absolute_import, print_function, division
import numpy as np
import sys
import logging
# logging.basicConfig(level=logging.DEBUG)
# np.set_printoptions()
def set_progress_storage(location):
global storage
storage = location
def progress(location, count, total):
"""
Progress update
"""
storage.store("percent_complete",round(count*100.0)/total)
logger.info("Progress: %s %d%%" % (location,round(count*100.0/total)))
def mprint(msg,data):
"""
Array/matrix print function
"""
m = np.array(data)
print(msg,m.shape,"=\n",m)
def callbacks():
return dict(
write = sys.stdout.write,
writeln = print,
debug = logging.debug,
info = logging.info,
warning = logging.warning,
error = logging.error,
critical = logging.critical,
progress = progress,
mprint = mprint
)
def uses(*funcs):
"""
Some sugar
"""
return [callbacks()[func] for func in funcs]
# ----- Minor test cases:
if __name__ == '__main__':
# logging.basicConfig(level=logging.DEBUG)
logging.debug("Test %i" % (1))
d = callbacks()['debug']
d("TEST")
wrln = callbacks()['writeln']
wrln("Hello %i" % 34)
progress = callbacks()['progress']
progress("I am half way",50,100)
list = [0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15,
0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15,
0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15,
0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15,
0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15]
mprint("list",list)
matrix = [[1,0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15],
[2,0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15],
[3,0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15],
[4,0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15],
[5,0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15],
[6,0.5,0.6096595 , -0.31559815, -0.52793285, 1.16573418e-15]]
mprint("matrix",matrix)
ix,dx = uses("info","debug")
ix("ix")
dx("dx")
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