1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
|
# GeneNetwork logger
#
# The standard python logging module is very good. This logger adds a
# few facilities on top of that. Main one being that it picks up
# settings for log levels (global and by module) and (potentially)
# offers some fine grained log levels for the standard levels.
#
# All behaviour is defined here. Global settings (defined in
# default_settings.py).
#
# To use logging and settings put this at the top of a module:
#
# import utility.logger
# logger = utility.logger.getLogger(__name__ )
#
# To override global behaviour set the LOG_LEVEL in default_settings.py
# or use an environment variable, e.g.
#
# env LOG_LEVEL=INFO ./bin/genenetwork2
#
# To override log level for a module replace that with, for example,
#
# import logging
# import utility.logger
# logger = utility.logger.getLogger(__name__,level=logging.DEBUG)
#
# We'll add more overrides soon.
import logging
import string
from utility.tools import LOG_LEVEL
class GNLogger:
"""A logger class with some additional functionality, such as
multiple parameter logging, SQL logging, timing, colors, and lazy
functions.
"""
def __init__(self,name):
self.logger = logging.getLogger(name)
def setLevel(self,value):
"""Set the undelying log level"""
self.logger.setLevel(value)
def debug(self,*args):
"""Call logging.debug for multiple args"""
self.collect(self.logger.debug,*args)
def info(self,*args):
"""Call logging.info for multiple args"""
self.collect(self.logger.info,*args)
def warning(self,*args):
"""Call logging.warning for multiple args"""
self.collect(self.logger.warning,*args)
self.logger.warning(self.collect(*args))
def error(self,*args):
"""Call logging.error for multiple args"""
self.collect(self.logger.error,*args)
def debugf(self,*args):
"""Call logging.debug for multiple args"""
self.collect(self.logger.debug,*args)
def sql(self, sqlcommand, fun = None):
"""Log SQL command, optionally invoking a timed fun"""
def collect(self,fun,*args):
"""Collect arguments and use fun to output one by one"""
for a in args:
fun(a)
# Get the module logger. You can override log levels at the
# module level
def getLogger(name, level = None):
gnlogger = GNLogger(name)
logger = gnlogger.logger
if level:
logger.setLevel(level)
else:
logger.setLevel(LOG_LEVEL)
logger.info("Log level of "+name+" set to "+logging.getLevelName(logger.getEffectiveLevel()))
return gnlogger
|
