blob: 84b3d37c5116969904b366d10bb72e90ad9d89b2 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
|
# INSTALL Genenetwork2 (GN2)
## Fetch GN2 from github
Clone the repository (currently ~800Mb) to local
git clone git@github.com:genenetwork2/genenetwork2.git
## Dependencies
GN2 requires
* redis
* mysql
## Required python modules
Install the following python modules:
* Flask
* pyyaml
* redis
* qtlreaper
* numarray
* pp
* Flask-SQLAlchemy
## Set up local file settings.py
```python
LOGFILE = """/tmp/flask_gn_log"""
#This is needed because Flask turns key errors into a
#400 bad request response with no exception/log
TRAP_BAD_REQUEST_ERRORS = True
DB_URI = """mysql://gn2:password@localhost/db_webqtl"""
SQLALCHEMY_DATABASE_URI = 'mysql://gn2:password@localhost/db_webqtl'
# http://pythonhosted.org/Flask-Security/configuration.html
SECURITY_CONFIRMABLE = True
SECURITY_TRACKABLE = True
SECURITY_REGISTERABLE = True
SECURITY_RECOVERABLE = True
SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org"
SECURITY_POST_LOGIN_VIEW = "/thank_you"
SQLALCHEMY_POOL_RECYCLE = 3600
SERVER_PORT = 5051
SECRET_HMAC_CODE = '*'
```
```sh
export WQFLASK_SETTINGS=$HOME/settings.py
source /home/pjotr/ve27/bin/activate
cd genenetwork2/wqflask
python ./runserver.py
or
python ./secure_server.py
```
|
