// Generated by CoffeeScript 1.3.3
(function() {

  $(function() {
    var Contains, dArr, fillOptions, fillOptionsForIE, gArr, getDefaultValue, getIndexByValue, initialDatasetSelection, lArr, removeOptions, sArr, setChoice, setDefault, tArr, updateChoice;
    sArr = window.sArr;
    gArr = window.gArr;
    tArr = window.tArr;
    dArr = window.dArr;
    lArr = window.lArr;
    console.log("sArr is now [jersey]:", sArr);
    console.log("gArr is now [jersey]:", gArr);
    initialDatasetSelection = function() {
      var dOptions, defaultDB, defaultSet, defaultSpecies, defaultType, gOptions, menu0, menu1, menu2, menu3, sOptions, tOptions;
      defaultSpecies = getDefaultValue("species");
      defaultSet = getDefaultValue("cross");
      defaultType = getDefaultValue("tissue");
      defaultDB = getDefaultValue("database");
      if (navigator.userAgent.indexOf("MSIE") >= 0) {
        sOptions = fillOptionsForIE(null, defaultSpecies);
        menu0 = "<SELECT NAME='species' ID='species' SIZE='1' onChange='fillOptions(\"species\");'>" + sOptions + "</Select>";
        document.getElementById("menu0").innerHTML = menu0;
        gOptions = fillOptionsForIE("species", defaultSet);
        menu1 = "<Select NAME='cross' size=1 id='cross' onchange='fillOptions(\"cross\");'>" + gOptions + "</Select><input type=\"button\" class=\"button\" value=\"Info\" onCLick=\"javascript:crossinfo();\">";
        document.getElementById("menu1").innerHTML = menu1;
        tOptions = fillOptionsForIE("cross", defaultType);
        menu2 = "<Select NAME='tissue' size=1 id='tissue' onchange='fillOptions(\"tissue\");'>" + tOptions + "</Select>";
        document.getElementById("menu2").innerHTML = menu2;
        dOptions = fillOptionsForIE("tissue", defaultDB);
        menu3 = "<Select NAME='database' size=1 id='database'>" + dOptions + "</Select><input type=\"button\" class=\"button\" value=\"Info\" onCLick=\"javascript:databaseinfo();\">";
        document.getElementById("menu3").innerHTML = menu3;
      } else {
        fillOptions(null);
      }
      return searchtip();
    };
    fillOptionsForIE = function(selectObjId, defaultValue) {
      var arr, groupObj, i, idx, len, options, speciesObj, typeObj;
      options = "";
      if (selectObjId == null) {
        len = sArr.length;
        i = 1;
        while (i < len) {
          if (sArr[i].val === defaultValue) {
            options = options + "<option selected=\"selected\" value='" + sArr[i].val + "'>" + sArr[i].txt + "</option>";
          } else {
            options = options + "<option value='" + sArr[i].val + "'>" + sArr[i].txt + "</option>";
          }
          i++;
        }
      } else if (selectObjId === "species") {
        speciesObj = document.getElementById("species");
        len = lArr.length;
        arr = [];
        idx = 0;
        i = 1;
        while (i < len) {
          if (lArr[i][0] === (getIndexByValue("species", speciesObj.value)).toString() && !Contains(arr, lArr[i][1])) {
            arr[idx++] = lArr[i][1];
          }
          i++;
        }
        idx = 0;
        len = arr.length;
        removeOptions("cross");
        i = 0;
        while (i < len) {
          if (gArr[arr[i]].val === defaultValue) {
            options = options + "<option selected=\"selected\" value='" + gArr[arr[i]].val + "'>" + gArr[arr[i]].txt + "</option>";
          } else {
            options = options + "<option value='" + gArr[arr[i]].val + "'>" + gArr[arr[i]].txt + "</option>";
          }
          i++;
        }
      } else if (selectObjId === "cross") {
        speciesObj = document.getElementById("species");
        groupObj = document.getElementById("cross");
        len = lArr.length;
        arr = [];
        idx = 0;
        i = 1;
        while (i < len) {
          if (lArr[i][0] === (getIndexByValue("species", speciesObj.value)).toString() && lArr[i][1] === (getIndexByValue("cross", groupObj.value)).toString() && !Contains(arr, lArr[i][2])) {
            arr[idx++] = lArr[i][2];
          }
          i++;
        }
        idx = 0;
        len = arr.length;
        removeOptions("tissue");
        i = 0;
        while (i < len) {
          if (tArr[arr[i]].val === defaultValue) {
            options = options + "<option selected=\"selected\" value='" + tArr[arr[i]].val + "'>" + tArr[arr[i]].txt + "</option>";
          } else {
            options = options + "<option value='" + tArr[arr[i]].val + "'>" + tArr[arr[i]].txt + "</option>";
          }
          i++;
        }
      } else if (selectObjId === "tissue") {
        speciesObj = document.getElementById("species");
        groupObj = document.getElementById("cross");
        typeObj = document.getElementById("tissue");
        len = lArr.length;
        arr = [];
        idx = 0;
        i = 1;
        while (i < len) {
          if (lArr[i][0] === (getIndexByValue("species", speciesObj.value)).toString() && lArr[i][1] === (getIndexByValue("cross", groupObj.value)).toString() && lArr[i][2] === (getIndexByValue("tissue", typeObj.value)).toString() && !Contains(arr, lArr[i][3])) {
            arr[idx++] = lArr[i][3];
          }
          i++;
        }
        idx = 0;
        len = arr.length;
        removeOptions("database");
        i = 0;
        while (i < len) {
          if (dArr[arr[i]].val === defaultValue) {
            options = options + "<option SELECTED value='" + dArr[arr[i]].val + "'>" + dArr[arr[i]].txt + "</option>";
          } else {
            options = options + "<option value='" + dArr[arr[i]].val + "'>" + dArr[arr[i]].txt + "</option>";
          }
          i++;
        }
      }
      return options;
    };
    fillOptions = function(selectObjId) {
      var arr, databaseObj, groupObj, i, idx, index_value, len, speciesObj, typeObj;
      console.log("[vacuum] selectObjId:", selectObjId);
      if (selectObjId == null) {
        speciesObj = document.getElementById("species");
        console.log("speciesObj:", speciesObj);
        len = sArr.length;
        i = 1;
        while (i < len) {
          speciesObj.options[i - 1] = new Option(sArr[i].txt, sArr[i].val);
          console.log("speciesObj.options:", speciesObj.options[i - 1]);
          i++;
        }
        return updateChoice("species");
      } else if (selectObjId === "species") {
        speciesObj = document.getElementById("species");
        console.log("speciesObj:", speciesObj);
        groupObj = document.getElementById("cross");
        console.log("groupObj:", groupObj);
        len = lArr.length;
        arr = [];
        idx = 0;
        i = 1;
        while (i < len) {
          index_value = getIndexByValue("species", speciesObj.value).toString();
          if (lArr[i][0] === (index_value && !Contains(arr, lArr[i][1]))) {
            arr[idx++] = lArr[i][1];
          }
          i++;
        }
        idx = 0;
        len = arr.length;
        removeOptions("cross");
        i = 0;
        while (i < len) {
          groupObj.options[idx++] = new Option(gArr[arr[i]].txt, gArr[arr[i]].val);
          i++;
        }
        return updateChoice("cross");
      } else if (selectObjId === "cross") {
        speciesObj = document.getElementById("species");
        groupObj = document.getElementById("cross");
        typeObj = document.getElementById("tissue");
        len = lArr.length;
        arr = [];
        idx = 0;
        i = 1;
        while (i < len) {
          if (lArr[i][0] === (getIndexByValue("species", speciesObj.value)).toString() && lArr[i][1] === (getIndexByValue("cross", groupObj.value)).toString() && !Contains(arr, lArr[i][2])) {
            arr[idx++] = lArr[i][2];
          }
          i++;
        }
        idx = 0;
        len = arr.length;
        removeOptions("tissue");
        i = 0;
        while (i < len) {
          typeObj.options[idx++] = new Option(tArr[arr[i]].txt, tArr[arr[i]].val);
          i++;
        }
        return updateChoice("tissue");
      } else if (selectObjId === "tissue") {
        speciesObj = document.getElementById("species");
        groupObj = document.getElementById("cross");
        typeObj = document.getElementById("tissue");
        databaseObj = document.getElementById("database");
        len = lArr.length;
        arr = [];
        idx = 0;
        i = 1;
        while (i < len) {
          if (lArr[i][0] === (getIndexByValue("species", speciesObj.value)).toString() && lArr[i][1] === (getIndexByValue("cross", groupObj.value)).toString() && lArr[i][2] === (getIndexByValue("tissue", typeObj.value)).toString() && !Contains(arr, lArr[i][3])) {
            arr[idx++] = lArr[i][3];
          }
          i++;
        }
        idx = 0;
        len = arr.length;
        removeOptions("database");
        i = 0;
        while (i < len) {
          databaseObj.options[idx++] = new Option(dArr[arr[i]].txt, dArr[arr[i]].val);
          i++;
        }
        return updateChoice("database");
      }
    };
    Contains = function(arr, obj) {
      var i;
      i = arr.length;
      if ((function() {
        var _results;
        _results = [];
        while (i--) {
          _results.push(arr[i] === obj);
        }
        return _results;
      })()) {
        return true;
      }
      return false;
    };
    removeOptions = function(selectObj) {
      var i, len, _results;
      if (typeof selectObj !== "object") {
        selectObj = document.getElementById(selectObj);
      }
      len = selectObj.options.length;
      i = 0;
      _results = [];
      while (i < len) {
        selectObj.options[0] = null;
        _results.push(i++);
      }
      return _results;
    };
    getIndexByValue = function(selectObjId, val) {
      var i;
      if (selectObjId === "species") {
        i = 1;
        while (i < sArr.length) {
          if (sArr[i].val === val) {
            return i;
          }
          i++;
        }
      } else if (selectObjId === "cross") {
        i = 1;
        while (i < gArr.length) {
          if (gArr[i].val === val) {
            return i;
          }
          i++;
        }
      } else if (selectObjId === "tissue") {
        i = 1;
        while (i < tArr.length) {
          if (tArr[i].val === val) {
            return i;
          }
          i++;
        }
      } else {

      }
    };
    setChoice = function(objId, val) {
      var Obj, i, idx;
      console.log("objId:", objId);
      console.log("val:", val);
      Obj = document.getElementById(objId);
      console.log("Obj:", Obj);
      idx = -1;
      i = 0;
      while (i < Obj.options.length) {
        if (Obj.options[i].value === val) {
          idx = i;
          break;
        }
        i++;
      }
      if (idx >= 0) {
        Obj.options[idx].selected = true;
        return fillOptions(objId);
      } else {
        Obj.options[0].selected = true;
        return fillOptions(objId);
      }
    };
    updateChoice = function(selectObjId) {
      var defaultDB, defaultSet, defaultSpecies, defaultType;
      if (selectObjId === "species") {
        defaultSpecies = getDefaultValue("species");
        return setChoice("species", defaultSpecies);
      } else if (selectObjId === "cross") {
        defaultSet = getDefaultValue("cross");
        return setChoice("cross", defaultSet);
      } else if (selectObjId === "tissue") {
        defaultType = getDefaultValue("tissue");
        return setChoice("tissue", defaultType);
      } else if (selectObjId === "database") {
        defaultDB = getDefaultValue("database");
        return setChoice("database", defaultDB);
      }
    };
    getDefaultValue = function(selectObjId) {
      var cookieDB, cookieSet, cookieSpecies, cookieType, defaultDB, defaultSet, defaultSpecies, defaultType;
      defaultSpecies = "mouse";
      defaultSet = "BXD";
      defaultType = "Hippocampus";
      defaultDB = "HC_M2_0606_P";
      if (selectObjId === "species") {
        cookieSpecies = getCookie("defaultSpecies");
        if (cookieSpecies) {
          defaultSpecies = cookieSpecies;
        }
        return defaultSpecies;
      } else if (selectObjId === "cross") {
        cookieSet = getCookie("defaultSet");
        if (cookieSet) {
          defaultSet = cookieSet;
        }
        return defaultSet;
      } else if (selectObjId === "tissue") {
        cookieType = getCookie("defaultType");
        if (cookieType) {
          defaultType = cookieType;
        }
        return defaultType;
      } else if (selectObjId === "database") {
        cookieDB = getCookie("defaultDB");
        if (cookieDB) {
          defaultDB = cookieDB;
        }
        return defaultDB;
      }
    };
    setDefault = function(thisform) {
      var cookieTest, defaultDB, defaultSet, defaultSpecies, defaultType;
      setCookie("cookieTest", "cookieTest", 1);
      cookieTest = getCookie("cookieTest");
      delCookie("cookieTest");
      if (cookieTest) {
        defaultSpecies = thisform.species.value;
        setCookie("defaultSpecies", defaultSpecies, 10);
        defaultSet = thisform.cross.value;
        setCookie("defaultSet", defaultSet, 10);
        defaultType = thisform.tissue.value;
        setCookie("defaultType", defaultType, 10);
        defaultDB = thisform.database.value;
        setCookie("defaultDB", defaultDB, 10);
        updateChoice("species");
        updateChoice("cross");
        updateChoice("tissue");
        updateChoice("database");
        return alert("The current settings are now your default");
      } else {
        return alert("You need to enable Cookies in your browser.");
      }
    };
    return initialDatasetSelection();
  });

}).call(this);