## ## GEMMA Version = 0.94 ## ## Command Line Input = -bfile /home/zas1024/gene/web/gemma/HLC -k ../web/gemma/output_HLC.cXX.txt -lmm 1 -o HLC_output1 ## ## Summary Statistics: ## number of total individuals = 427 ## number of analyzed individuals = 427 ## number of covariates = 1 ## number of phenotypes = 1 ## number of total SNPs = 358499 ## number of analyzed SNPs = 273349 ## REMLE log-likelihood in the null model = -3657.8 ## MLE log-likelihood in the null model = -3665.89 ## pve estimate in the null model = 3.30749e-06 ## se(pve) in the null model = nan ## vg estimate in the null model = 16.8101 ## ve estimate in the null model = 1.68101e+06 ## beta estimate in the null model = 890.587 ## se(beta) = 62.7439 ## ## Computation Time: ## total computation time = 1.857 min ## computation time break down: ## time on eigen-decomposition = 0.0015 min ## time on calculating UtX = 0.406 min ## time on optimization = 1.30517 min ##