## ## GEMMA Version = 0.94 ## ## Command Line Input = -bfile /home/zas1024/gene/web/gemma/HLC -k ../web/gemma/output_HLC.cXX.txt -lmm 1 -o HLC_output ## ## Summary Statistics: ## number of total individuals = 427 ## number of analyzed individuals = 427 ## number of covariates = 1 ## number of phenotypes = 1 ## number of total SNPs = 358499 ## number of analyzed SNPs = 273349 ## REMLE log-likelihood in the null model = -3650.56 ## MLE log-likelihood in the null model = -3657.67 ## pve estimate in the null model = 0.840196 ## se(pve) in the null model = 0.106606 ## vg estimate in the null model = 4.2245e+06 ## ve estimate in the null model = 265756 ## beta estimate in the null model = 1202.14 ## se(beta) = 24.9475 ## ## Computation Time: ## total computation time = 2.68417 min ## computation time break down: ## time on eigen-decomposition = 0.00166667 min ## time on calculating UtX = 0.417 min ## time on optimization = 2.11733 min ##