# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. # # This program is free software: you can redistribute it and/or modify it # under the terms of the GNU Affero General Public License # as published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. # See the GNU Affero General Public License for more details. # # This program is available from Source Forge: at GeneNetwork Project # (sourceforge.net/projects/genenetwork/). # # Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) # at rwilliams@uthsc.edu and xzhou15@uthsc.edu # # # # This module is used by GeneNetwork project (www.genenetwork.org) # # Created by GeneNetwork Core Team 2010/08/10 # # Last updated by NL 2011/01/27 # created by Ning Liu 07/01/2010 # This script is to generate selectDatasetMenu.js file for cascade menu in the main search page http://www.genenetwork.org/. # This script will be run automatically every one hour or manually when database has been changed . from __future__ import print_function, division import sys, os current_file_name = __file__ pathname = os.path.dirname( current_file_name ) abs_path = os.path.abspath(pathname) sys.path.insert(0, abs_path + '/..') import MySQLdb import os import string import time import datetime from base import template from base import webqtlConfig ################################################################################# # input: searchArray, targetValue # function: retrieve index info of target value in designated array (searchArray) # output: return index info ################################################################################## def getIndex(searchArray=None, targetValue=None): for index in range(len(searchArray)): if searchArray[index][0]==targetValue: return index # build MySql database connection con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD) cursor = con.cursor() # create js_select.js file fileHandler = open(webqtlConfig.HTMLPATH + 'javascript/selectDatasetMenu.js', 'w') # define SpeciesString, GroupString, TypeString, DatabasingString, LinkageString for output # outputSpeciesStr is for building Species Array(sArr) in js file; outputGroupStr is for Group Array(gArr) # outputTypeStr is for Type Array(tArr); outputDatabaseStr is for Database Array(dArr) # outputLinkStr is for Linkage Array(lArr) outputTimeStr ="/* Generated Date : %s , Time : %s */ \n" % (datetime.date.today(),time.strftime("%H:%M ", time.localtime())) outputTimeStr ="" outputSpeciesStr ='var sArr = [\n{txt:\'\',val:\'\'},\n' outputGroupStr ='var gArr = [\n{txt:\'\',val:\'\'},\n' outputTypeStr ='var tArr = [\n{txt:\'\',val:\'\'},\n' outputDatabaseStr ='var dArr = [\n{txt:\'\',val:\'\'},\n' outputLinkStr ='var lArr = [\n null,\n' # built speices array in js file for select menu in the main search page http://www.genenetwork.org/ cursor.execute("select Name, MenuName from Species order by OrderId") speciesResult = cursor.fetchall() speciesTotalResult = list(speciesResult) speciesResultsTotalNum = cursor.rowcount if speciesResultsTotalNum >0: for speciesItem in speciesResult: speciesVal = speciesItem[0] speciesTxt = speciesItem[1] outputSpeciesStr += '{txt:\'%s\',val:\'%s\'},\n'%(speciesTxt,speciesVal) # 'All Species' option for 'Species' select menu outputSpeciesStr +='{txt:\'All Species\',val:\'All Species\'}];\n\n' #speciesTotalResult is a list which inclues all species' options speciesTotalResult.append(('All Species','All Species')) # built group array in js file for select menu in the main search page http://www.genenetwork.org/ cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name") groupResults = cursor.fetchall() groupTotalResults = list(groupResults) groupResultsTotalNum = cursor.rowcount if groupResultsTotalNum > 0: for groupItem in groupResults: groupVal = groupItem[0] groupTxt = groupItem[1] outputGroupStr += '{txt:\'%s\',val:\'%s\'},\n'%(groupTxt,groupVal) # add 'All Groups' option for 'Group' select menu outputGroupStr +='{txt:\'All Groups\',val:\'all groups\'}];\n\n' # groupTotalResults is a list which inclues all groups' options groupTotalResults.append(('all groups','All Groups')) # built type array in js file for select menu in the main search page http://www.genenetwork.org/ cross = groupVal cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (webqtlConfig.PUBLICTHRESH)) typeResults = cursor.fetchall() typeTotalResults = list(typeResults) typeResultsTotalNum = cursor.rowcount if typeResultsTotalNum > 0: for typeItem in typeResults: typeVal = typeItem[0] typeTxt = typeItem[1] outputTypeStr += '{txt:\'%s\',val:\'%s\'},\n'%(typeTxt,typeVal) # add 'Phenotypes' and 'Genotypes' options for 'Type' select menu outputTypeStr +='{txt:\'Phenotypes\',val:\'Phenotypes\'},\n' outputTypeStr +='{txt:\'Genotypes\',val:\'Genotypes\'}];\n\n' # typeTotalResults is a list which inclues all types' options typeTotalResults.append(('Phenotypes','Phenotypes')) typeTotalResults.append(('Genotypes','Genotypes')) # built dataset array in js file for select menu in the main search page http://www.genenetwork.org/ tissue = typeVal cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (webqtlConfig.PUBLICTHRESH)) datasetResults = cursor.fetchall() datasetTotalResults = list(datasetResults) datasetResultsTotalNum = cursor.rowcount if datasetResultsTotalNum > 0: for datasetItem in datasetResults: datasetVal = datasetItem[0] datasetTxt = datasetItem[1] outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal) # This part is to built linkage array in js file, the linkage is among Species, Group, Type and Database. # The format of linkage array is [speciesIndex, groupIndex, typeIndex, databaseIndex] if speciesResultsTotalNum >0: for speciesItem in speciesResult: speciesVal = speciesItem[0] sIndex = getIndex(searchArray=speciesTotalResult,targetValue=speciesVal)+1 # retrieve group info based on specie cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and Species.Name='%s' and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name" % speciesVal) groupResults = cursor.fetchall() groupResultsNum = cursor.rowcount if groupResultsNum > 0: for groupItem in groupResults: groupVal = groupItem[0] gIndex = getIndex(searchArray=groupTotalResults, targetValue=groupVal)+1 cross = groupVal # if group also exists in PublishFreeze table, then needs to add related Published Phenotypes in Database Array(dArr) and Linkage Array(lArr) # 'MDP' case is related to 'Mouse Phenome Database' cursor.execute("select PublishFreeze.Id from PublishFreeze, InbredSet where PublishFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross) if (cursor.fetchall()): typeVal = "Phenotypes" if cross=='MDP': datasetTxt = "Mouse Phenome Database" else: datasetTxt = "%s Published Phenotypes" % cross datasetVal = "%sPublish" % cross outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'% (datasetTxt,datasetVal) datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt)) tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1 dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1 outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex) # if group also exists in GenoFreeze table, then needs to add related Genotypes in database Array(dArr) cursor.execute("select GenoFreeze.Id from GenoFreeze, InbredSet where GenoFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross) if (cursor.fetchall()): typeVal = "Genotypes" datasetTxt = "%s Genotypes" % cross datasetVal = "%sGeno" % cross outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal) typeTotalResults.append(('Genotypes','Genotypes')) datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt)) tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1 dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1 outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex) # retrieve type(tissue) info based on group # if cross is equal to 'BXD', then need to seach for 'BXD' and 'BXD300' InbredSet if cross == "BXD": cross2 = "BXD', 'BXD300" else: cross2 = cross cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (cross2, webqtlConfig.PUBLICTHRESH)) typeResults = cursor.fetchall() typeResultsNum = cursor.rowcount if typeResultsNum > 0: for typeItem in typeResults: typeVal = typeItem[0] tIndex = getIndex(searchArray=typeTotalResults, targetValue=typeVal)+1 # retrieve database(dataset) info based on group(InbredSet) and type(Tissue) tissue = typeVal cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and Tissue.name = '%s' and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (cross2, tissue, webqtlConfig.PUBLICTHRESH)) datasetResults = cursor.fetchall() datasetResultsNum = cursor.rowcount if datasetResultsNum > 0: for datasetItem in datasetResults: datasetVal = datasetItem[0] dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1 outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex) # add 'All Phenotypes' option for 'Database' select menu # for 'All Species'option in 'Species' select menu, 'Database' select menu will show 'All Phenotypes' option outputDatabaseStr += '{txt:\'%s\',val:\'%s\'}];\n\n'%('All Phenotypes','_allPublish') datasetTotalResults.append(('_allPublish','All Phenotypes')) sIndex = getIndex(searchArray=speciesTotalResult,targetValue='All Species')+1 gIndex = getIndex(searchArray=groupTotalResults, targetValue='all groups')+1 tIndex = getIndex(searchArray=typeTotalResults,targetValue='Phenotypes')+1 dIndex = getIndex(searchArray=datasetTotalResults, targetValue='_allPublish')+1 outputLinkStr +='[%d,%d,%d,%d]];\n\n'%(sIndex,gIndex,tIndex,dIndex) # Combine sArr, gArr, tArr, dArr and lArr output string together outputStr = outputTimeStr+outputSpeciesStr+outputGroupStr+outputTypeStr+outputDatabaseStr+outputLinkStr outputStr +=''' /* * function: based on different browser use, will have different initial actions; * Once the index.html page is loaded, this function will be called */ function initialDatasetSelection() { defaultSpecies =getDefaultValue('species'); defaultSet =getDefaultValue('cross'); defaultType =getDefaultValue('tissue'); defaultDB =getDefaultValue('database'); if (navigator.userAgent.indexOf('MSIE')>=0) { sOptions = fillOptionsForIE(null,defaultSpecies); var menu0 ="<SELECT NAME='species' ID='species' SIZE='1' onChange='fillOptions(\\"species\\");'>"+sOptions+"</Select>"; document.getElementById('menu0').innerHTML = menu0; gOptions = fillOptionsForIE('species',defaultSet); var menu1 ="<Select NAME='cross' size=1 id='cross' onchange='fillOptions(\\"cross\\");'>"+gOptions+"</Select><input type=\\"button\\" class=\\"button\\" value=\\"Info\\" onCLick=\\"javascript:crossinfo();\\">"; document.getElementById('menu1').innerHTML =menu1; tOptions = fillOptionsForIE('cross',defaultType); var menu2 ="<Select NAME='tissue' size=1 id='tissue' onchange='fillOptions(\\"tissue\\");'>"+tOptions+"</Select>"; document.getElementById('menu2').innerHTML =menu2; dOptions = fillOptionsForIE('tissue',defaultDB); var menu3 ="<Select NAME='database' size=1 id='database'>"+dOptions+"</Select><input type=\\"button\\" class=\\"button\\" value=\\"Info\\" onCLick=\\"javascript:databaseinfo();\\">"; document.getElementById('menu3').innerHTML =menu3; }else{ fillOptions(null); } searchtip(); } /* * input: selectObjId (designated select menu, such as species, cross, etc... ) * defaultValue (default Value of species, cross,tissue or database) * function: special for IE browser,setting options value for select menu dynamically based on linkage array(lArr), * output: options string */ function fillOptionsForIE(selectObjId,defaultValue) { var options=''; if(selectObjId==null) { var len = sArr.length; for (var i=1; i < len; i++) { // setting Species' option if( sArr[i].val==defaultValue){ options =options+"<option selected=\\"selected\\" value='"+sArr[i].val+"'>"+sArr[i].txt+"</option>"; }else{ options =options+"<option value='"+sArr[i].val+"'>"+sArr[i].txt+"</option>"; } } }else if(selectObjId=='species') { var speciesObj = document.getElementById('species'); var len = lArr.length; var arr = []; var idx = 0; for (var i=1; i < len; i++) { //get group(cross) info from lArr if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1])) { arr[idx++]=lArr[i][1]; } } idx=0; len = arr.length; removeOptions("cross"); for (var i=0; i < len; i++) { // setting Group's option if( gArr[arr[i]].val==defaultValue){ options =options+"<option selected=\\"selected\\" value='"+gArr[arr[i]].val+"'>"+gArr[arr[i]].txt+"</option>"; }else{ options =options+"<option value='"+gArr[arr[i]].val+"'>"+gArr[arr[i]].txt+"</option>"; } } }else if(selectObjId=='cross') { var speciesObj = document.getElementById('species'); var groupObj = document.getElementById('cross'); var len = lArr.length; var arr = []; var idx = 0; for (var i=1; i < len; i++) { //get type(tissue) info from lArr if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2])) { arr[idx++]=lArr[i][2]; } } idx=0; len = arr.length; removeOptions("tissue"); for (var i=0; i < len; i++) { // setting Type's option if( tArr[arr[i]].val==defaultValue){ options =options+"<option selected=\\"selected\\" value='"+tArr[arr[i]].val+"'>"+tArr[arr[i]].txt+"</option>"; }else{ options =options+"<option value='"+tArr[arr[i]].val+"'>"+tArr[arr[i]].txt+"</option>"; } } }else if(selectObjId=='tissue') { var speciesObj = document.getElementById('species'); var groupObj = document.getElementById('cross'); var typeObj = document.getElementById('tissue'); var len = lArr.length; var arr = []; var idx = 0; for (var i=1; i < len; i++) { //get dataset(database) info from lArr if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3])) { arr[idx++]=lArr[i][3]; } } idx=0; len = arr.length; removeOptions("database"); for (var i=0; i < len; i++) { // setting Database's option if( dArr[arr[i]].val==defaultValue){ options =options+"<option SELECTED value='"+dArr[arr[i]].val+"'>"+dArr[arr[i]].txt+"</option>"; }else{ options =options+"<option value='"+dArr[arr[i]].val+"'>"+dArr[arr[i]].txt+"</option>"; } } } return options; } /* * input: selectObjId (designated select menu, such as species, cross, etc... ) * function: setting options value for select menu dynamically based on linkage array(lArr) * output: null */ function fillOptions(selectObjId) { if(selectObjId==null) { var speciesObj = document.getElementById('species'); var len = sArr.length; for (var i=1; i < len; i++) { // setting Species' option speciesObj.options[i-1] = new Option(sArr[i].txt, sArr[i].val); } updateChocie('species'); }else if(selectObjId=='species') { var speciesObj = document.getElementById('species'); var groupObj = document.getElementById('cross'); var len = lArr.length; var arr = []; var idx = 0; for (var i=1; i < len; i++) { //get group(cross) info from lArr if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1])) { arr[idx++]=lArr[i][1]; } } idx=0; len = arr.length; removeOptions("cross"); for (var i=0; i < len; i++) { // setting Group's option groupObj.options[idx++] = new Option(gArr[arr[i]].txt, gArr[arr[i]].val); } updateChocie('cross'); }else if(selectObjId=='cross') { var speciesObj = document.getElementById('species'); var groupObj = document.getElementById('cross'); var typeObj = document.getElementById('tissue'); var len = lArr.length; var arr = []; var idx = 0; for (var i=1; i < len; i++) { //get type(tissue) info from lArr if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2])) { arr[idx++]=lArr[i][2]; } } idx=0; len = arr.length; removeOptions("tissue"); for (var i=0; i < len; i++) { // setting Type's option typeObj.options[idx++] = new Option(tArr[arr[i]].txt, tArr[arr[i]].val); } updateChocie('tissue'); }else if(selectObjId=='tissue') { var speciesObj = document.getElementById('species'); var groupObj = document.getElementById('cross'); var typeObj = document.getElementById('tissue'); var databaseObj = document.getElementById('database'); var len = lArr.length; var arr = []; var idx = 0; for (var i=1; i < len; i++) { //get dataset(database) info from lArr if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3])) { arr[idx++]=lArr[i][3]; } } idx=0; len = arr.length; removeOptions("database"); for (var i=0; i < len; i++) { // setting Database's option databaseObj.options[idx++] = new Option(dArr[arr[i]].txt, dArr[arr[i]].val); } updateChocie('database'); } } /* * input: arr (targeted array); obj (targeted value) * function: check whether targeted array contains targeted value or not * output: return true, if array contains targeted value, otherwise return false */ function Contains(arr,obj) { var i = arr.length; while (i--) { if (arr[i] == obj) { return true; } } return false; } /* * input: selectObj (designated select menu, such as species, cross, etc... ) * function: clear designated select menu's option * output: null */ function removeOptions(selectObj) { if (typeof selectObj != 'object'){ selectObj = document.getElementById(selectObj); } var len = selectObj.options.length; for (var i=0; i < len; i++) { // clear current selection selectObj.options[0] = null; } } /* * input: selectObjId (designated select menu, such as species, cross, etc... ) * Value: target value * function: retrieve Index info of target value in designated array * output: index info */ function getIndexByValue(selectObjId,val) { if(selectObjId=='species') { for(var i=1;i<sArr.length;i++){ if(sArr[i].val==val) return i; } }else if(selectObjId=='cross') { for(var i=1;i<gArr.length;i++) if(gArr[i].val==val) return i; }else if(selectObjId=='tissue') { for(var i=1;i<tArr.length;i++) if(tArr[i].val==val) return i; } else return; } /* * input: objId (designated select menu, such as species, cross, etc... ) * val(targeted value) * function: setting option's selected status for designated select menu based on target value, also update the following select menu in the main search page * output: return true if selected status has been set, otherwise return false. */ function setChoice(objId,val) { var Obj = document.getElementById(objId); var idx=-1; for(i=0;i<Obj.options.length;i++){ if(Obj.options[i].value==val){ idx=i; break; } } if(idx>=0){ //setting option's selected status Obj.options[idx].selected=true; //update the following select menu fillOptions(objId); }else{ Obj.options[0].selected=true; fillOptions(objId); } } // setting option's selected status based on default setting or cookie setting for Species, Group, Type and Database select menu in the main search page http://www.genenetwork.org/ function updateChocie(selectObjId){ if (selectObjId =='species') { defaultSpecies= getDefaultValue('species'); //setting option's selected status setChoice('species',defaultSpecies); }else if (selectObjId =='cross') { defaultSet= getDefaultValue('cross'); //setting option's selected status setChoice('cross',defaultSet); }else if (selectObjId =='tissue') { defaultType= getDefaultValue('tissue'); //setting option's selected status setChoice('tissue',defaultType); }else if (selectObjId =='database') { defaultDB= getDefaultValue('database'); //setting option's selected status setChoice('database',defaultDB); } } //get default value;if cookie exists, then use cookie value, otherwise use default value function getDefaultValue(selectObjId){ //define default value var defaultSpecies = 'mouse' var defaultSet = 'BXD' var defaultType = 'Hippocampus' var defaultDB = 'HC_M2_0606_P' if (selectObjId =='species') { //if cookie exists, then use cookie value, otherwise use default value var cookieSpecies = getCookie('defaultSpecies'); if(cookieSpecies) { defaultSpecies= cookieSpecies; } return defaultSpecies; }else if (selectObjId =='cross'){ var cookieSet = getCookie('defaultSet'); if(cookieSet){ defaultSet= cookieSet; } return defaultSet; }else if (selectObjId =='tissue'){ var cookieType = getCookie('defaultType'); if(cookieType){ defaultType= cookieType; } return defaultType; }else if (selectObjId =='database') { var cookieDB = getCookie('defaultDB'); if(cookieDB){ defaultDB= cookieDB; } return defaultDB; } } //setting default value into cookies for the dropdown menus: Species,Group, Type, and Database function setDefault(thisform){ setCookie('cookieTest', 'cookieTest', 1); var cookieTest = getCookie('cookieTest'); delCookie('cookieTest'); if (cookieTest){ var defaultSpecies = thisform.species.value; setCookie('defaultSpecies', defaultSpecies, 10); var defaultSet = thisform.cross.value; setCookie('defaultSet', defaultSet, 10); var defaultType = thisform.tissue.value; setCookie('defaultType', defaultType, 10); var defaultDB = thisform.database.value; setCookie('defaultDB', defaultDB, 10); updateChocie('species'); updateChocie('cross'); updateChocie('tissue'); updateChocie('database'); alert("The current settings are now your default"); } else{ alert("You need to enable Cookies in your browser."); } } ''' # write all strings' info into selectDatasetMenu.js file fileHandler.write(outputStr) fileHandler.close()