# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. # # This program is free software: you can redistribute it and/or modify it # under the terms of the GNU Affero General Public License # as published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. # See the GNU Affero General Public License for more details. # # This program is available from Source Forge: at GeneNetwork Project # (sourceforge.net/projects/genenetwork/). # # Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) # at rwilliams@uthsc.edu and xzhou15@uthsc.edu # # # # This module is used by GeneNetwork project (www.genenetwork.org) # # Created by GeneNetwork Core Team 2010/08/10 # # Last updated by GeneNetwork Core Team 2010/10/20 sharing_body_string = """ <TD vAlign=top width="100%" align="left" height=10 bgColor=#eeeeee> <p style="font-size:18px;font-family:verdana;color:black"><B> Data Set Download</B></p> <Form METHOD="get" ACTION="/webqtl/main.py" name="SEARCHFORM"> <TABLE width="800" border="0"> <!-- SPECIES SELECTION --> <TR> <TD align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%"> <B>Species:</B> </TD> <TD width="3%"> </TD> <TD NOWRAP width="85%" align="left"> <DIV Id="menu0"> <Select NAME="species" size=1 id="species" onchange="fillOptions('species');"> </Select> </DIV> </TD> </TR> <!-- GROUP SELECTION --> <TR> <TD align="right" height="35" style="font-size:14px;font-family:verdana;color:black"> <B>Group:</B> </TD> <TD> </TD> <TD NOWRAP width="85%" align="left"> <DIV Id="menu1"> <Select NAME="cross" size=1 id="cross" onchange="fillOptions('cross');"> </Select> <input type="button" class="button" value=" Info " onCLick="javascript:crossinfo();"> </DIV> </TD> </TR> <!-- TYPE SELECTION --> <TR> <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black"> <B>Type:</B> </TD> <TD> </TD> <TD NOWRAP width="85%" align="left"> <DIV Id="menu2"> <Select NAME="tissue" size=1 id="tissue" onchange="fillOptions('tissue');"> </Select> </DIV> </TD> </TR> <!-- DATABASE SELECTION --> <TR> <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black"> <B>Database:</B> </TD> <TD> </TD> <TD NOWRAP width="85%" align="left"> <DIV Id="menu3"> <Select NAME="database" size=1 id="database"> </Select> <input type="button" class="button" value=" Info " onCLick="javascript:databaseinfo();"> </DIV> </TD> </TR> <!-- SEARCH, MAKE DEFAULT, ADVANCED SEARCH --> <TR> <td></td> <td></td> <TD ALIGN="left" HEIGHT="40"> <INPUT TYPE="button" CLASS="button" STYLE="font-size:12px" VALUE=" Download " onCLick="javascript:datasetinfo();"> </TD> </TR> </TABLE> <SCRIPT SRC="/javascript/selectDatasetMenu.js"></SCRIPT> </FORM> <p style="font-size:18px;font-family:verdana;color:black"><B> GeneNetwork Accession Number</B></p> <form method="get" action="/webqtl/main.py" name="f2" target="_blank"> <INPUT TYPE="hidden" NAME="FormID" VALUE="sharinginfo"> <TABLE width="800" border="0"> <tr> <td align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%"><b>GN:</b></td> <td width=3%></td> <td><input type="text" name="GN_AccessionId" size="40" /> E.g. 112</td> </tr> <tr> <td></td> <td></td> <td HEIGHT="40"> <input type="Submit" class="button" STYLE="font-size:12px" VALUE=" Submit "> </td> </tr> </table> </form> </td> """ sharinginfo_body_string = """<td> <a href="/webqtl/main.py?FormID=sharingListDataset">List of DataSets</a><br> <H1 class="title" id="parent-fieldname-title">%s <a href="/webqtl/main.py?FormID=sharinginfoedit&GN_AccessionId=%s"><img src="/images/modify.gif" alt="modify this page" border="0" valign="middle"></a> <span style="color:red;">%s</span> </H1> <table border="0" width="100%%"> <tr> <td valign="top" width="50%%"> <TABLE cellSpacing=0 cellPadding=5 width=100%% border=0> <TR><td><b>GN Accession:</b> GN%s</TD></tr> <TR><TD><b>GEO Series:</b> %s</TD></TR> <TR><TD><b>Title:</b> %s</TD></TR> <TR><TD><b>Organism:</b> <a href=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=%s>%s</a></TD></tr> <tr><TD><b>Group:</b> %s</TD></TR> <TR><TD><b>Tissue:</b> %s</TD></tr> <tr><TD><b>Dataset Status:</b> %s</TD></tr> <TR><TD><b>Platforms:</b> %s</TD></TR> <TR><TD><b>Normalization:</b> %s</TD></TR> <TR><TD><!--Code below to Show hide Contact information --> <a href="#" onclick="colapse('answer1')">See Contact Information</a><br> <span id="answer1" style="display: none; return: false;"> %s<br> %s<br> %s<br> %s<br> %s, %s %s %s<br> Tel. %s<br> %s<br> <a href="%s">%s</a> </span><!--Code above to Show hide Contact information --></TD></TR> </TABLE> </td> <td valign="top" width="50%%"> <table border="0" width="100%%"> <tr> <td bgcolor="#dce4e1"><b>Download datasets and supplementary data files</b></td> </tr> <tr> <td>%s</td> </tr> </table> </td> </tr> </table> <HR> <p> <table width="100%%" border="0" cellpadding="5" cellspacing="0"> <tr><td><span style="font-size:115%%;font-weight:bold;">Summary:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">About the cases used to generate this set of data:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">About the tissue used to generate this set of data:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">About downloading this data set:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">About the array platform:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">About data values and data processing:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Data source acknowledgment:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Experiment Type:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Overall Design:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Contributor:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Citation:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Submission Date:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Laboratory:</span></td></tr> <tr><td> %s<br><br></td></tr> <tr><td><span style="font-size:115%%;font-weight:bold;">Samples:</span></td></tr> <tr><td> %s<br><br></td></tr> </table> </p> </td> """ sharinginfoedit_body_string = """<td> <H1 class="title">%s</H1> <script language="javascript"> function CheckGNAccesionId(){ if (document.sharinginfoupdate.GN_AccesionId.value.length == 0){ alert("Please input GN Accesion Id"); document.sharinginfoupdate.GN_AccesionId.focus(); return false; } else { return true; } } </script> <table border="0" CELLSPACING="0" CELLPADDING="8"> <form name="sharinginfoupdate" method="post" action="/webqtl/main.py?FormID=sharinginfoupdate" onsubmit="return CheckGNAccesionId();"> <input type="hidden" name="Id" value="%s"> <tr><TH COLSPAN=2><h2 class="title">Principal Investigator</h2></TH></tr> <tr><td align="right" width="100"><b>Contact Name:</b></td><td width="200"><input type='text' name='Contact_Name' size='90' value='%s'></td></tr> <tr><td align="right"><b>Emails:</b></td><td><input type='text' name='Emails' size='90' value='%s'></td></tr> <tr><td align="right"><b>Phone:</b></td><td><input type='text' name='Phone' size='90' value='%s'></td></tr> <tr><td align="right"><b>URL:</b></td><td><input type='text' name='URL' size='90' value='%s'></td></tr> <tr><td align="right"><b>Organization Name:</b></td><td><input type='text' name='Organization_Name' size='90' value='%s'></td></tr> <tr><td align="right"><b>Department:</b></td><td><input type='text' name='Department' size='90' value='%s'></td></tr> <tr><td align="right"><b>Laboratory:</b></td><td><input type='text' name='Laboratory' size='90' value='%s'></td></tr> <tr><td align="right"><b>Address:</b></td><td><input type='text' name='Street' size='90' value='%s'></td></tr> <tr><td align="right"><b>City:</b></td><td><input type='text' name='City' size='90' value='%s'></td></tr> <tr><td align="right"><b>State:</b></td><td><input type='text' name='State' size='90' value='%s'></td></tr> <tr><td align="right"><b>ZIP:</b></td><td><input type='text' name='ZIP' size='90' value='%s'></td></tr> <tr><td align="right"><b>Country:</b></td><td><input type='text' name='Country' size='90' value='%s'></td></tr> <tr><TH COLSPAN=2><h2 class="title">Summary</h2></TH></tr> <tr><td align="right"><b>Summary: </b></td><td><TEXTAREA NAME="Summary" cols="77" rows="15">%s</textarea></td></tr> <tr><TH COLSPAN=2><h2 class="title">Biology</h2></TH></tr> <tr><td align="right"><b>Experiment Design:</b></td><td><TEXTAREA NAME="Experiment_Type" cols="77" rows="15">%s</textarea></td></tr> <tr><td align="right"><b>About the cases used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Cases" cols="77" rows="15">%s</textarea></td></tr> <tr><td align="right"><b>About the tissue used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Tissue" cols="77" rows="15">%s</textarea></td></tr> <tr><TH COLSPAN=2><h2 class="title">Technique</h2></TH></tr> <tr><td align="right"><b>About downloading this data set:</b></td><td><TEXTAREA NAME="About_Download" cols="77" rows="15">%s</textarea></td></tr> <tr><td align="right"><b>About the array platform:</b></td><td><TEXTAREA NAME="About_Array_Platform" cols="77" rows="15">%s</textarea></td></tr> <tr><TH COLSPAN=2><h2 class="title">Bioinformatics</h2></TH></tr> <tr><td align="right"><b>About data values and<br>data processing:</b></td><td><TEXTAREA NAME="About_Data_Values_Processing" cols="77" rows="15">%s</textarea></td></tr> <tr><td align="right"><b>Overall Design:</b></td><td><TEXTAREA NAME="Overall_Design" cols="77" rows="15">%s</textarea></td></tr> <tr><TH COLSPAN=2><h2 class="title">Misc</h2></TH></tr> <tr><td align="right"><b>Contributor:</b></td><td><TEXTAREA NAME="Contributor" cols="77" rows="15">%s</textarea></td></tr> <tr><td align="right"><b>Citation:</b></td><td><TEXTAREA NAME="Citation" cols="77" rows="5">%s</textarea></td></tr> <tr><td align="right"><b>Data source acknowledgment:</b></td><td><TEXTAREA NAME="Data_Source_Acknowledge" cols="77" rows="15">%s</textarea></td></tr> <tr><TH COLSPAN=2><h2 class="title">Administrator ONLY</h2></TH></tr> <tr><td align="right"><b>GN Accesion Id:</b></td><td><input type='text' name='GN_AccesionId' size='90' value='%s'></td></tr> <tr><td align="right"><b>DB Title in GN:</b></td><td><input type='text' name='InfoPageTitle' size='90' value='%s'></td></tr> <tr><td align="right"><b>GEO Series:</b></td><td><input type='text' name='GEO_Series' size='90' value='%s'></td></tr> <tr><td align="right"><b>Status:</b></td><td><input type='text' name='Status' size='90' value='%s'></td></tr> <tr><td align="right"><b>Title:</b></td><td><input type='text' name='Title' size='90' value='%s'></td></tr> <tr><td align="right"><b>Organism_Id (Taxonomy ID):</b></td><td><input type='text' name='Organism_Id' size='90' value='%s'></td></tr> <tr><td align="right"><b>Organism:</b></td><td><input type='text' name='Organism' size='90' value='%s'></td></tr> <tr><td align="right"><b>Submission Date:</b></td><td><input type='text' name='Submission_Date' size='90' value='%s'></td></tr> <tr><td align="right"><b>Platforms:</b></td><td><input type='text' name='Platforms' size='90' value='%s'></td></tr> <tr><td align="right"><b>Species:</b></td><td><input type='text' name='Species' size='90' value='%s'></td></tr> <tr><td align="right"><b>Tissue:</b></td><td><input type='text' name='Tissue' size='90' value='%s'></td></tr> <tr><td align="right"><b>Normalization:</b></td><td><input type='text' name='Normalization' size='90' value='%s'></td></tr> <tr><td align="right"><b>Inbred Set:</b></td><td><input type='text' name='InbredSet' size='90' value='%s'></td></tr> <tr><td align="right"><b>Info Page Name:</b></td><td><input type='text' name='InfoPageName' size='90' value='%s'></td></tr> <tr><td align="right"><b>Samples:</b></td><td><input type='text' name='Samples' size='90' value='%s'></td></tr> <tr><td align="right"><b>Authorized Users:</b></td><td><input type='text' name='AuthorizedUsers' size='90' value='%s'></td></tr> <tr><td align="right"><b>Progress:</b></td><td><input type='text' name='Progress' size='90' value='%s'></td></tr> <tr><td> <colspan='2' align="center"><input type="Submit" class="button" style="font-size:12px" value=" Submit "></td></tr> </form> </table> </td>"""