index_body_string = """

Select and Search

Species:
Group:
Type:
Data Set:
		Databases marked with ** suffix are not public yet. Access requires user login.
Get Any:
		Enter terms, genes, ID numbers in the Get Any field. Use * or ? wildcards (Cypa?, synap). Use Combined for terms such as tyrosine kinase.
Combined:

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Quick HELP Examples and User's Guide

You can also use advanced commands. Copy these simple examples
into the Get Any or Combined search fields:

POSITION=(chr1 25 30) finds genes, markers, or transcripts on chromosome 1 between 25 and 30 Mb.
MEAN=(15 16) LRS=(23 46) in the Combined field finds highly expressed genes (15 to 16 log2 units) AND with peak LRS linkage between 23 and 46.
RIF=mitochondrial searches RNA databases for GeneRIF links.
WIKI=nicotine searches GeneWiki for genes that you or other users have annotated with the word nicotine.
GO:0045202 searches for synapse-associated genes listed in the Gene Ontology.
GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)
in Combined finds synapse-associated genes with cis eQTL on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.
RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)
in Combined finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999.

Websites Affiliated with GeneNetwork

Genome Browser at UTHSC
Galaxy at UTHSC
GeneNetwork at Amazon Cloud (EC2)
GeneNetwork Source Codes at SourceForge
GeneNetwork Source Codes at GitHub

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Getting Started

Select Species (or select All)
Select Group (a specific sample)
Select Type of data:
- Phenotype (traits)
- Genotype (markers)
- Expression (mRNAs)
Select a Database
Enter search terms in the Get Any or Combined field: words, genes, ID numbers, probes, advanced search commands
Click on the Search button
Optional: Use the Make Default button to save your preferences

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How to Use GeneNetwork

Take a 20-40 minute GeneNetwork Tour that includes screen shots and typical steps in the analysis.

For information about resources and methods, select the buttons.

Try the Workstation site to explore data and features that are being implemented.

Review the Conditions and Contacts pages for information on the status of data sets and advice on their use and citation.

Mirror and Development Sites

Main GN site at UTHSC (main site)
Australia at the UWA
California at UCLA
Germany at the HZI
Netherlands at the Hubrecht (Development)
Memphis at the U of M
Singapore at the NUS
Switzerland at the EPFL

History and Archive

GeneNetwork's Time Machine links to earlier versions that correspond to specific publication dates.

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