/*For Tissue Correlation Page; Default Export Tissue Text*/ function exportTissueText(items){ var windowName = 'ExportTissueText'; var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(0,items[i][j].indexOf('/'));} else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ html += items[i][j].slice(0, items[i][j].indexOf('/')); } else { html += "Correlation";} html += '\t';} html += '\n';} html += '</PRE>'; html += '<BR><BR>'; html += '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ html += items[i][j].slice(0, items[i][j].indexOf('/'));} else { html += 'P Value';} html += '\t';} html += '\n';} html += '</PRE>'; newWindow.document.write(html); newWindow.document.close(); newWindow.focus();/**/ } /*Export Tissue Text for long label*/ function exportTissueVerboseText(items){ var windowName = 'ExportVerboseText'; var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(0,items[i][j].indexOf('/'));} else if ((i>0) && (j == 0)){ position1 = items[i][j].indexOf('/') + 1; position2 = items[i][j].indexOf('/', position1); html += items[i][j].slice(position2 + 1, items[i][j].length);} else if ((i == 0) && (j>0)){ html += items[i][j].slice(0, items[i][j].indexOf('/')) ;} else { html += "Correlation";} html += '\t';} html += '\n';} html += '</PRE>'; html += '<BR><BR>'; html += '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} else if ((i>0) && (j == 0)){ position1 = items[i][j].indexOf('/') + 1; position2 = items[i][j].indexOf('/', position1) + 1; html += items[i][j].slice(position2, items[i][j].length);} else if ((i == 0) && (j>0)){ html += items[i][j].slice(0, items[i][j].indexOf('/'));} else { html += 'P Value';} html += '\t';} html += '\n';} html += '</PRE>'; newWindow.document.write(html); newWindow.document.close(); newWindow.focus();/**/ } /*For Tissue Correlation Page; Default Save function for results of symbol count =1*/ function exportAllTissueText(items){ var windowName = 'ExportTissueText'; var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(0,items[i][j].indexOf('/'));} else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ html += items[i][j].slice(0, items[i][j].indexOf('/')); } else { html += "Correlation";} html += '\t';} html += '\n';} html += '</PRE>'; newWindow.document.write(html); newWindow.document.close(); newWindow.focus();/**/ } /* Display Short Label for Tissue */ function displayTissueShortName(){ var geneSymbols = document.getElementsByName("Symbol"); var exportButton = document.getElementsByName("export")[0]; var shortNameCheck = document.getElementById("shortName_1"); // to check if currently short if (shortNameCheck.style.display == 'none'){ exportButton.value="Export"; exportButton.onclick = function(){exportTissueText(allCorrelations);}; } else { exportButton.value="Export"; exportButton.onclick = function(){exportTissueText(allCorrelations);}; } for (i=0; i < geneSymbols.length; i++){ var shortName = document.getElementById("shortName_" + String(i)); var verboseName = document.getElementById("verboseName_" + String(i)); var verboseName2 = document.getElementById("verboseName2_" + String(i)); var verboseName3 = document.getElementById("verboseName3_" + String(i)); if (shortName.style.display == 'block') { shortName.style.display = 'none'; } else if (shortName.style.display == 'none') { if (verboseName.style.display == 'block'){ verboseName.style.display = 'none'; verboseName2.style.display = 'none'; verboseName3.style.display = 'none'; } shortName.style.display = 'block'; } } } /* Display Long Label for Tissue */ function displayTissueVerboseName(){ var geneSymbols = document.getElementsByName("Symbol"); var exportButton = document.getElementsByName("export")[0]; var verboseNameCheck = document.getElementById("verboseName_0"); // to check if currently verbose if (verboseNameCheck.style.display == 'none'){ exportButton.value="Export"; exportButton.onclick = function(){exportTissueVerboseText(allCorrelations);}; } else { exportButton.value="Export"; exportButton.onclick = function(){exportTissueText(allCorrelations);}; } for (i=0; i < geneSymbols.length; i++){ var verboseName = document.getElementById("verboseName_" + String(i)); var verboseName2 = document.getElementById("verboseName2_" + String(i)); var verboseName3 = document.getElementById("verboseName3_" + String(i)); var shortName = document.getElementById("shortName_" + String(i)); if (verboseName.style.display == 'block') { verboseName.style.display = 'none'; verboseName2.style.display = 'none'; verboseName3.style.display = 'none'; } else if (verboseName.style.display == 'none'){ if (shortName.style.display == 'block'){ shortName.style.display = 'none'; } verboseName.style.display = 'block'; verboseName2.style.display = 'block'; verboseName3.style.display = 'block'; } } } /* Info page for dataset of tissue correlation */ function tissueDatasetInfo(thisForm,dataSetNames){ var windowName = 'dataset_info'; var Index = thisForm.selectedIndex; var datasetName =dataSetNames[Index] var page = '/dbdoc/' + datasetName + '.html'; newWindow = open(page,windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"); newWindow.focus() } /*for correlation matrix page*/ /* Display Short Label in Correlation Matrix */ function displayShortName(){ var traitList = document.getElementsByName("traitList")[0].value.split("\t"); var exportButton = document.getElementsByName("export")[0]; var shortNameCheck = document.getElementById("shortName_1"); // to check if currently short if (shortNameCheck.style.display == 'none'){ exportButton.value="Export"; exportButton.onclick = function(){exportAbbreviationText(allCorrelations);}; } else { exportButton.value="Export"; exportButton.onclick = function(){exportText(allCorrelations);}; } for (i=0; i < traitList.length; i++){ var shortName = document.getElementById("shortName_" + String(i)); var verboseName = document.getElementById("verboseName_" + String(i)); var verboseName2 = document.getElementById("verboseName2_" + String(i)); var verboseName3 = document.getElementById("verboseName3_" + String(i)); if (shortName.style.display == 'block') { shortName.style.display = 'none'; } else if (shortName.style.display == 'none') { if (verboseName.style.display == 'block'){ verboseName.style.display = 'none'; verboseName2.style.display = 'none'; verboseName3.style.display = 'none'; } shortName.style.display = 'block'; } } } /* Display Long Label in Correlation Matrix*/ function displayVerboseName(){ var traitList = document.getElementsByName("traitList")[0].value.split("\t"); var exportButton = document.getElementsByName("export")[0]; var verboseNameCheck = document.getElementById("verboseName_0"); // to check if currently verbose if (verboseNameCheck.style.display == 'none'){ exportButton.value="Export"; exportButton.onclick = function(){exportVerboseText(allCorrelations);}; } else { exportButton.value="Export"; exportButton.onclick = function(){exportText(allCorrelations);}; } for (i=0; i < traitList.length; i++){ var verboseName = document.getElementById("verboseName_" + String(i)); var verboseName2 = document.getElementById("verboseName2_" + String(i)); var verboseName3 = document.getElementById("verboseName3_" + String(i)); var shortName = document.getElementById("shortName_" + String(i)); if (verboseName.style.display == 'block') { verboseName.style.display = 'none'; verboseName2.style.display = 'none'; verboseName3.style.display = 'none'; } else if (verboseName.style.display == 'none'){ if (shortName.style.display == 'block'){ shortName.style.display = 'none'; } verboseName.style.display = 'block'; verboseName2.style.display = 'block'; verboseName3.style.display = 'block'; } } } /*Export for long label in Correlation Matrix*/ function exportVerboseText(items){ var windowName = 'ExportVerboseText'; var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(0,items[i][j].indexOf('/'));} else if ((i>0) && (j == 0)){ position1 = items[i][j].indexOf('/') + 1; position2 = items[i][j].indexOf('/', position1); html += "Trait " + String(i) + ": " + items[i][j].slice(position2 + 1, items[i][j].length);} else if ((i == 0) && (j>0)){ html += items[i][j];} else { html += "Correlation";} html += '\t';} html += '\n';} html += '</PRE>'; html += '<BR><BR>'; html += '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} else if ((i>0) && (j == 0)){ position1 = items[i][j].indexOf('/') + 1; position2 = items[i][j].indexOf('/', position1) + 1; html += "Trait " + String(i) + ": " + items[i][j].slice(position2, items[i][j].length);} else if ((i == 0) && (j>0)){ html += items[i][j];} else { html += 'N';} html += '\t';} html += '\n';} html += '</PRE>'; newWindow.document.write(html); newWindow.document.close(); newWindow.focus();/**/ } /*Default Export for labels in Correlation Matrix*/ function exportText(items){ var windowName = 'ExportText'; var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ //alert(" i="+i+"---j="+j+"----item[i][j]=="+items[i][j]); if ((i>0) && (j>0)){ html += items[i][j].slice(0,items[i][j].indexOf('/'));} else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ html += items[i][j].slice(0, items[i][j].indexOf('/'));} else { html += "Correlation";} html += '\t';} html += '\n';} html += '</PRE>'; html += '<BR><BR>'; html += '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ html += items[i][j].slice(0, items[i][j].indexOf('/'));} else { html += 'N';} html += '\t';} html += '\n';} html += '</PRE>'; newWindow.document.write(html); newWindow.document.close(); newWindow.focus();/**/ } /*Export for short label in Correlation Matrix*/ function exportAbbreviationText(items){ var windowName = 'ExportAbbreviationText'; var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(0,items[i][j].indexOf('/'));} else if ((i>0) && (j == 0)){ position1 = items[i][j].indexOf('/') + 1; position2 = items[i][j].indexOf('/', position1); html += "Trait " + String(i) + ": " + items[i][j].slice(position1, position2);} else if ((i == 0) && (j>0)){ html += items[i][j];} else { html += "Correlation";} html += '\t';} html += '\n';} html += '</PRE>'; html += '<BR><BR>'; html += '<PRE>'; for (i=0;i<items.length;i++){ for (j=0;j<items[i].length;j++){ if ((i>0) && (j>0)){ html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} else if ((i>0) && (j == 0)){ position1 = items[i][j].indexOf('/') + 1; position2 = items[i][j].indexOf('/', position1); html += "Trait " + String(i) + ": " + items[i][j].slice(position1, position2);} else if ((i == 0) && (j>0)){ html += items[i][j];} else { html += 'N';} html += '\t';} html += '\n';} html += '</PRE>'; newWindow.document.write(html); newWindow.document.close(); newWindow.focus();/**/ } /*dynamic change formID for process bar display issue. Only Single symbol result page needs process bar*/ function selectFormIdForTissueCorr(fmName){ var thisForm = getForm(fmName); var geneSymbolStr =thisForm.geneSymbols.value; var geneSymbolStrSplit =geneSymbolStr.split(/\n/);//delimiter is very important here len=geneSymbolStrSplit.length; if (len==1){ thisForm.FormID.value="dispTissueCorrelationResult"; } else{ thisForm.FormID.value="dispMultiSymbolsResult"; } thisForm.submit() } /*make default for dropdown menu in tissue correlation page*/ function makeTissueCorrDefault(thisform){ setCookie('cookieTest', 'cookieTest', 1); var cookieTest = getCookie('cookieTest'); delCookie('cookieTest'); if (cookieTest){ var defaultTissueDataset = thisform.tissueProbeSetFeezeId.value; setCookie('defaultTissueDataset', defaultTissueDataset, 10); alert("The current dataset is set to default."); } else{ alert("You need to enable Cookies in your browser."); } } /*set default selected value for tissue correlation dataset Id*/ function getTissueCorrDefault(fmName){ var thisForm = getForm(fmName); if (getCookie('defaultTissueDataset')){ thisForm.tissueProbeSetFeezeId.selectedIndex =(getCookie('defaultTissueDataset'))-1; } else{ thisForm.tissueProbeSetFeezeId.selectedIndex =0; } }