## ## GEMMA Version = 0.94 ## ## Command Line Input = -bfile HLC -k output_HLC.cXX.txt -lmm 1 -o HLC_output ## ## Summary Statistics: ## number of total individuals = 427 ## number of analyzed individuals = 427 ## number of covariates = 1 ## number of phenotypes = 1 ## number of total SNPs = 358499 ## number of analyzed SNPs = 273349 ## REMLE log-likelihood in the null model = -4252.51 ## MLE log-likelihood in the null model = -4261.76 ## pve estimate in the null model = 0.314624 ## se(pve) in the null model = 0.403683 ## vg estimate in the null model = 2.61389e+07 ## ve estimate in the null model = 1.88332e+07 ## beta estimate in the null model = 5107.48 ## se(beta) = 210.014 ## ## Computation Time: ## total computation time = 2.5965 min ## computation time break down: ## time on eigen-decomposition = 0.0015 min ## time on calculating UtX = 0.414167 min ## time on optimization = 2.03267 min ##