## ## GEMMA Version = 0.94 ## ## Command Line Input = -bfile HLC -k output_HLC.cXX.txt -lmm 1 -o HLC_output ## ## Summary Statistics: ## number of total individuals = 427 ## number of analyzed individuals = 427 ## number of covariates = 1 ## number of phenotypes = 1 ## number of total SNPs = 358499 ## number of analyzed SNPs = 273349 ## REMLE log-likelihood in the null model = -3351.61 ## MLE log-likelihood in the null model = -3357.96 ## pve estimate in the null model = 0.858988 ## se(pve) in the null model = 0.0889649 ## vg estimate in the null model = 1.0633e+06 ## ve estimate in the null model = 57733.1 ## beta estimate in the null model = 620.978 ## se(beta) = 11.6278 ## ## Computation Time: ## total computation time = 2.67033 min ## computation time break down: ## time on eigen-decomposition = 0.00183333 min ## time on calculating UtX = 0.399833 min ## time on optimization = 2.12417 min ##