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UCLA BHHBF2 Muscle Female Only 
Accession number: GN187
Data Status: Open data. Please cite: van Nas A, Ingram-Drake L, Sinsheimer JS, Wang SS, Schadt EE, Drake T, Lusis AJ (2010) Expression quantitative trait loci: replication, tissue- and sex-specificity in mice. Genetics 185:1059-1068 (PMID: 20439777
Summary:
This is a sex-specific subset of data published by van Nas and colleagues. They used an Agilent array to measure expression of most genes (~24,000 60-mer probes). The data are described more fully in the paper and in the GEO GSE data sets: Expression profiling of Muscle tissue from C57BL/6J X C3H/HeJ)F2 and (C3H/HeJ X C57BL/6J)F2
About the cases used to generate this set of data:
This is a sex-specific subset of the original data. Please see Gene Expression Omnibus data set GSE12795 for details.
About the tissue used to generate this set of data:
Muscle from F2 intercross progeny were generated by intercrossing F1 mice. Mice were fed chow diet containing 4% fat (Ralston-Purina Co., St. Louis, MO) until 8 weeks of age and then were placed on a high-fat "Western" diet containing 42% fat and 0.15% cholesterol (Teklad 88137, Harlan Teklad, Madison WI) for 12 weeks. At 20 weeks mice were sacrificed, after a 12-hour fast. Muscle tissues were dissected and flash frozen in liquid N2 and stored at -80 deg C.
| Index | TubeID | Group | Strain | Age | Sex | Source |
| 1 | R2595E.1 | GDP | 129S1/SvImJ | 59 | F | UTHSC RW |
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About downloading this data set:
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About the array platfrom:
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| Index | TubeID | Strain | Original CEL | Scale factor | Background Average | Present | Absent | Marginal | AFFX-b-ActinMur (3'/5') | AFFX-GapdhMur (3'/5') | Batch Id | Used for batch control |
| 1 | R2595E.1 | 129S1/SvImJ | R2595E.1.CEL | 1.79 | 115 | 61.00% | 37.50% | 1.50% | 1.46 | 0.77 | 1 | Y |
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Data source acknowledgment:
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Information about this text file:
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GEO Series Data: This section to be used for GEO submission of the whole series of arrays
GSE Series
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